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AT2G27770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.877
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF868)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF868); LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT3G04860.1); Has 288 Blast hits to 288 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVH7eggNOG:ENOG410YDKYEMBL:AC005824EMBL:AK117201
EMBL:BT005309EMBL:CP002685EnsemblPlants:AT2G27770EnsemblPlants:AT2G27770.1
entrez:817323GeneID:817323Gramene:AT2G27770.1hmmpanther:PTHR31972
hmmpanther:PTHR31972:SF10IntAct:Q9ZUX8InterPro:IPR008586KEGG:ath:AT2G27770
OMA:FRKKKGNPfam:PF05910Pfscan:PS51257PhylomeDB:Q9ZUX8
PIR:G84676Proteomes:UP000006548RefSeq:NP_180345.1STRING:3702.AT2G27770.1
TAIR:AT2G27770UniGene:At.38721UniGene:At.74315UniProt:Q9ZUX8
Coordinates (TAIR10) chr2:-:11833089..11834051
Molecular Weight (calculated) 36098.00 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.27
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)