suba logo
AT2G27760.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNAisopentenyltransferase 2
Curator
Summary (TAIR10)
Encodes tRNA isopentenyltransferase, similar to yeast MOD5.
Computational
Description (TAIR10)
tRNAisopentenyltransferase 2 (IPT2); CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 5 (TAIR:AT5G19040.1); Has 8447 Blast hits to 8274 proteins in 2665 species: Archae - 0; Bacteria - 5426; Metazoa - 146; Fungi - 137; Plants - 431; Viruses - 0; Other Eukaryotes - 2307 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G27760-MONOMERBioCyc:MetaCyc:AT2G27760-MONOMERBRENDA:2.5.1.75EC:2.5.1.75eggNOG:COG0324eggNOG:KOG1384EMBL:AB062609
EMBL:AC005824EMBL:AF109376EMBL:AK221649EMBL:AY080847EMBL:BT001906EMBL:CP002685EnsemblPlants:AT2G27760
EnsemblPlants:AT2G27760.1entrez:817322Gene3D:3.40.50.300GeneID:817322Genevisible:Q9ZUX7GO:GO:0005524GO:GO:0005739
GO:GO:0005829GO:GO:0006400GO:GO:0009691GO:GO:0009824GO:GO:0052381gramene_pathway:2.5.1.75gramene_pathway:PWY-2781
HAMAP:MF_00185hmmpanther:PTHR11088hmmpanther:PTHR11088:SF26HOGENOM:HOG000082879InParanoid:Q9ZUX7InterPro:IPR018022InterPro:IPR027417
InterPro:IPR030666KEGG:00908+2.5.1.75KEGG:ath:AT2G27760KO:K00791OMA:RDSAIPIPaxDb:Q9ZUX7Pfam:PF01715
Pfam:Q9ZUX7PhylomeDB:Q9ZUX7PIR:F84676PIR:T52061PIRSF:PIRSF039110PRIDE:Q9ZUX7PRO:PR:Q9ZUX7
ProteinModelPortal:Q9ZUX7Proteomes:UP000006548RefSeq:NP_565658.1SMR:Q9ZUX7STRING:3702.AT2G27760.1SUPFAM:SSF52540TAIR:AT2G27760
tair10-symbols:ATIPT2tair10-symbols:IPPTtair10-symbols:IPT2TIGRfam:TIGR00174TIGRFAMs:TIGR00174UniGene:At.10555UniProt:Q9ZUX7
Coordinates (TAIR10) chr2:+:11824860..11827432
Molecular Weight (calculated) 53101.30 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.49
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMLNPSNGG IEGEKMKKKA KVVVIMGPTG SGKSKLAVDL ASHFPVEIIN ADAMQIYSGL DVLTNKVTVD EQKGVPHHLL GTVSSDMEFT ARDFRDFTVP
101: LIEEIVSRNH IPVLVGGTHY YIQAVVSKFL LDDAAEDTEE CCADVASVVD QDMVVESVFG RDDLSHGYEL LKELDPVAAN RIHPNNHRKI NQYLSLHASR
201: GVLPSKLYQG KTAENWGCIN ASRFDYCLIC MDAETAVLDR YVEQRVDAMV DAGLLDEVYD IYKPGADYTR GLRQSIGVRE FEDFLKIHLS ETCAGHLTSL
301: SNDDKVMKEN LRKILNFPKD DKLRIMLEEA IDRVKLNTRR LLRRQKRRVS RLETVFGWNI HYIDATEYIL SKSEESWNAQ VVKPASEIIR CFLETETESG
401: RDPTSGKSIE RDLWTQYVCE ACGNKILRGR HEWEHHKQGR THRKRTTRHK NSQTYKNREV QEAEVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)