suba logo
AT2G27720.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 60S acidic ribosomal protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1976 Blast hits to 1975 proteins in 364 species: Archae - 32; Bacteria - 0; Metazoa - 785; Fungi - 446; Plants - 440; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Protein Annotations
EMBL:AC005824EMBL:AF410295EMBL:AY085945EMBL:AY093717EMBL:CP002685EMBL:Z26542EnsemblPlants:AT2G27720
EnsemblPlants:AT2G27720.1entrez:817318ExpressionAtlas:P51407GeneID:817318Genevisible:P51407GO:GO:0003735GO:GO:0005840
GO:GO:0006414HAMAP:MF_01478hmmpanther:PTHR21141hmmpanther:PTHR21141:SF48HOGENOM:HOG000229897InParanoid:P51407InterPro:IPR027534
iPTMnet:P51407ncoils:CoilPfam:P51407Pfam:PF00428PhylomeDB:P51407PIR:B84676PRIDE:P51407
PRO:PR:P51407ProteinModelPortal:P51407Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_180340.1SMR:P51407TAIR:AT2G27720UniGene:At.66359UniProt:P51407
Coordinates (TAIR10) chr2:+:11818696..11819370
Molecular Weight (calculated) 11452.50 Da
IEP (calculated) 4.26
GRAVY (calculated) -0.17
Length 115 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVVAAFLLA VLSGKASPTT GDIKDILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG GGVAVASATS GGGGGGGAPA AESKKEEKKE
101: EKEESDDDMG FSLFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)