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AT2G27710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : cytosol 18433157
AmiGO : nucleus 15496452
AmiGO : nucleus 18433157
AmiGO : plasma membrane 17317660
AmiGO : plastid 18431481
TAIR : plasma membrane 17317660
TAIR : cytosol 18433157
TAIR : nucleus 18433157
TAIR : plastid 18431481
TAIR : nucleus 15496452
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 60S acidic ribosomal protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27720.1); Has 1875 Blast hits to 1874 proteins in 360 species: Archae - 31; Bacteria - 1; Metazoa - 679; Fungi - 442; Plants - 437; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2058eggNOG:KOG3449EMBL:AK317218EnsemblPlants:AT2G27710EnsemblPlants:AT2G27710.1EnsemblPlants:AT2G27710.2EnsemblPlants:AT2G27710.3
entrez:817317ExpressionAtlas:B9DGN3GeneID:817317GO:GO:0003735GO:GO:0005840GO:GO:0006414Gramene:AT2G27710.1
Gramene:AT2G27710.2Gramene:AT2G27710.3HAMAP:MF_01478InterPro:IPR027534iPTMnet:B9DGN3ncoils:CoilOMA:TCPSAND
PaxDb:B9DGN3Pfam:PF00428Pfam:Q9SLF7PhylomeDB:B9DGN3PRIDE:B9DGN3ProteinModelPortal:B9DGN3RefSeq:NP_180339.1
RefSeq:NP_850106.1RefSeq:NP_973549.1SMR:B9DGN3STRING:3702.AT2G27710.1TAIR:AT2G27710UniGene:At.11572UniGene:At.1345
UniGene:At.24020UniProt:B9DGN3UniProt:Q9SLF7
Coordinates (TAIR10) chr2:+:11816929..11817670
Molecular Weight (calculated) 11444.40 Da
IEP (calculated) 4.33
GRAVY (calculated) -0.16
Length 115 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG GGVAVASATS GGGGGGGASA AESKKEEKKE
101: EKEESDDDMG FSLFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)