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AT2G27630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.905
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT2G27650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSNEeggNOG:KOG1887EMBL:CP002685EnsemblPlants:AT2G27630
EnsemblPlants:AT2G27630.1entrez:817309GeneID:817309GO:GO:0016787
GO:GO:0046872Gramene:AT2G27630.1hmmpanther:PTHR22975hmmpanther:PTHR22975:SF9
InParanoid:F4IGQ2InterPro:IPR006865InterPro:IPR006866InterPro:IPR007087
iPTMnet:F4IGQ2KEGG:ath:AT2G27630OMA:FLDCHELPaxDb:F4IGQ2
Pfam:PF04780Pfam:PF04781PRIDE:F4IGQ2PROSITE:PS00028
ProteinModelPortal:F4IGQ2Proteomes:UP000006548RefSeq:NP_180331.2scanprosite:PS00028
SUPFAM:SSF54001TAIR:AT2G27630UniGene:At.49283UniProt:F4IGQ2
Coordinates (TAIR10) chr2:-:11787669..11792010
Molecular Weight (calculated) 127720.00 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.33
Length 1122 amino acids
Sequence (TAIR10)
(BLAST)
0001: MESTTFLKDA VSVKLHAKAK ELFANGDHIK ALEIIEDMIC VNKEDKNIWF LYSEQGYMFT KLSEKAENLD VDFTFKLGAV GCSSEHEKLL SLCAHGFHTL
0101: AHHIGSVMYY KKCLKKAKQC LSVSNQSEDS DSSVAQMSLH KNKTNKDLET LIKNAETAIA LSKIGKLKGL LEEDDEPEVL ESKSSSEPVK NEIKGLRSFW
0201: LGLNVKVKRD FMKVSIAKLT SFVQRVYDRP RQNALEQILV SAREDRKWTF WMCQNCSEKF SSAEECKKHL EQEHAAGFKP SKEMDMKRIG KDWARKISVG
0301: GWEPVDTGAA VEMIKNRLAD VKAFSYKNGW SKEWPLASDD ERGKLLKEIK NLLVMFRDLK ILPCSVRDCV MQYPLRYFGE LEVSKQSLVD SHLVETPQSI
0401: CFLDCHELNK ILNFLKRIKS ERDDGIDVVS RAVDSILSST RVKEKVDFDP QFSLLLLDRR LLKSNNAPIN DEGTINVFDP NVYPKAPAQG DDIISWLTDY
0501: NSVEKTFPIP IRVHNLDIWV AVLRAVQFTC RTLETKYAKK VQVFNYSVAL TAVEDLCISE DERRRNLQED QWNSYASLLS DRCEEGVLRN SLTTKLFVCA
0601: VRDVLEGASD LTFEFPDFEE CMNLIRGRKS LSDDIVLKSI AFLKILAHTK VMLIDSKILL IDKSRISLLN DLTRLSVFDN RTYLLELLKN FLLNEIIIMA
0701: SKAKLDAAAA AEADLLLEEE KKSQSKKRKN TSKKKTSTSI SSPLSKTVEH KSSDILEPES TSPSLGKVEE DSMEPDATLS SERGRLEISP NTVNQEEVTQ
0801: NIPVEDSQSE HLESALRDAA TRYNSALDMT LKALLNIQIL KEDLMQPFQD HPEEHVPPAL RNFFTAIVSD GINVEGVYSC LLRDLLASLE EVISMSSDAA
0901: EVLVTILESW HCWKNAERES LVTRLFTLEE NERMSCRKCR KKPNYPEQSS YGIVMAADSI RDLKCALGNI EFVDILKVIR MDYTMLCDVK TGGCGITNLV
1001: HHILSKCPPV FIIVLEWEKS ETEKEISETT KALYWEIDIS RMYEGLKPNT KYRLVSMVGC GVEEEEHICI AYENNRWFNL RHDALTREDV GNWKSVVGFC
1101: EERKVRPEIL FYEATGSIDS LN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)