AT2G27630.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.905 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT2G27650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:-:11787669..11792010 | ||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 127720.00 Da | ||||||||||||||||||||||||||||||||
IEP (calculated) | 5.67 | ||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
Length | 1122 amino acids | ||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MESTTFLKDA VSVKLHAKAK ELFANGDHIK ALEIIEDMIC VNKEDKNIWF LYSEQGYMFT KLSEKAENLD VDFTFKLGAV GCSSEHEKLL SLCAHGFHTL 0101: AHHIGSVMYY KKCLKKAKQC LSVSNQSEDS DSSVAQMSLH KNKTNKDLET LIKNAETAIA LSKIGKLKGL LEEDDEPEVL ESKSSSEPVK NEIKGLRSFW 0201: LGLNVKVKRD FMKVSIAKLT SFVQRVYDRP RQNALEQILV SAREDRKWTF WMCQNCSEKF SSAEECKKHL EQEHAAGFKP SKEMDMKRIG KDWARKISVG 0301: GWEPVDTGAA VEMIKNRLAD VKAFSYKNGW SKEWPLASDD ERGKLLKEIK NLLVMFRDLK ILPCSVRDCV MQYPLRYFGE LEVSKQSLVD SHLVETPQSI 0401: CFLDCHELNK ILNFLKRIKS ERDDGIDVVS RAVDSILSST RVKEKVDFDP QFSLLLLDRR LLKSNNAPIN DEGTINVFDP NVYPKAPAQG DDIISWLTDY 0501: NSVEKTFPIP IRVHNLDIWV AVLRAVQFTC RTLETKYAKK VQVFNYSVAL TAVEDLCISE DERRRNLQED QWNSYASLLS DRCEEGVLRN SLTTKLFVCA 0601: VRDVLEGASD LTFEFPDFEE CMNLIRGRKS LSDDIVLKSI AFLKILAHTK VMLIDSKILL IDKSRISLLN DLTRLSVFDN RTYLLELLKN FLLNEIIIMA 0701: SKAKLDAAAA AEADLLLEEE KKSQSKKRKN TSKKKTSTSI SSPLSKTVEH KSSDILEPES TSPSLGKVEE DSMEPDATLS SERGRLEISP NTVNQEEVTQ 0801: NIPVEDSQSE HLESALRDAA TRYNSALDMT LKALLNIQIL KEDLMQPFQD HPEEHVPPAL RNFFTAIVSD GINVEGVYSC LLRDLLASLE EVISMSSDAA 0901: EVLVTILESW HCWKNAERES LVTRLFTLEE NERMSCRKCR KKPNYPEQSS YGIVMAADSI RDLKCALGNI EFVDILKVIR MDYTMLCDVK TGGCGITNLV 1001: HHILSKCPPV FIIVLEWEKS ETEKEISETT KALYWEIDIS RMYEGLKPNT KYRLVSMVGC GVEEEEHICI AYENNRWFNL RHDALTREDV GNWKSVVGFC 1101: EERKVRPEIL FYEATGSIDS LN |
||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)