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AT2G27600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.
Computational
Description (TAIR10)
SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink).
Protein Annotations
EC:3.6.4.6eggNOG:ENOG410XRHNeggNOG:KOG0739EMBL:AC005824EMBL:AC006232EMBL:AF367297EMBL:AY087749
EMBL:AY091684EMBL:CP002685EnsemblPlants:AT2G27600EnsemblPlants:AT2G27600.1entrez:817306Gene3D:1.20.58.280Gene3D:3.40.50.300
GeneID:817306Genevisible:Q9ZNT0GO:GO:0005524GO:GO:0005634GO:GO:0005737GO:GO:0005771GO:GO:0007032
GO:GO:0007033GO:GO:0007049GO:GO:0009506GO:GO:0010091GO:GO:0015031GO:GO:0016192GO:GO:0016787
GO:GO:0032585GO:GO:0055075GO:GO:0055078Gramene:AT2G27600.1hmmpanther:PTHR23074hmmpanther:PTHR23074:SF93HOGENOM:HOG000225146
InParanoid:Q9ZNT0IntAct:Q9ZNT0InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960InterPro:IPR007330InterPro:IPR015415
InterPro:IPR027417KEGG:ath:AT2G27600KO:K12196OMA:KPNIKWEPaxDb:Q9ZNT0Pfam:PF00004Pfam:PF04212
Pfam:PF09336Pfam:Q9ZNT0PhylomeDB:Q9ZNT0PIR:F84674PRIDE:Q9ZNT0PRO:PR:Q9ZNT0PROSITE:PS00674
ProteinModelPortal:Q9ZNT0Proteomes:UP000006548RefSeq:NP_180328.1scanprosite:PS00674SMART:SM00382SMART:SM00745SMR:Q9ZNT0
STRING:3702.AT2G27600.1SUPFAM:SSF116846SUPFAM:SSF52540TAIR:AT2G27600tair10-symbols:ATSKD1tair10-symbols:SKD1tair10-symbols:VPS4
UniGene:At.13265UniProt:Q9ZNT0
Coordinates (TAIR10) chr2:+:11781226..11783730
Molecular Weight (calculated) 48595.60 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.58
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)