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AT2G27580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : A20/AN1-like zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1072 Blast hits to 1061 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 10; Plants - 488; Viruses - 6; Other Eukaryotes - 114 (source: NCBI BLink).
Protein Annotations
BioGrid:2656eggNOG:ENOG4111UWCeggNOG:KOG3173EMBL:AC005824
EMBL:AC006232EMBL:AY072454EMBL:AY085258EMBL:BT000341
EMBL:CP002685EnsemblPlants:AT2G27580EnsemblPlants:AT2G27580.1EnsemblPlants:AT2G27580.2
entrez:817304Gene3D:4.10.1110.10GeneID:817304Genevisible:Q9ZNU9
GO:GO:0003677GO:GO:0008270Gramene:AT2G27580.1Gramene:AT2G27580.2
hmmpanther:PTHR10634HOGENOM:HOG000238229InParanoid:Q9ZNU9IntAct:Q9ZNU9
InterPro:IPR000058InterPro:IPR002653KEGG:ath:AT2G27580OMA:QEPRLCA
PaxDb:Q9ZNU9Pfam:PF01428Pfam:PF01754Pfam:Q9ZNU9
Pfscan:PS51036Pfscan:PS51039PhylomeDB:Q9ZNU9PIR:D84674
PRIDE:Q9ZNU9PRO:PR:Q9ZNU9PROSITE:PS51036PROSITE:PS51039
ProteinModelPortal:Q9ZNU9Proteomes:UP000006548RefSeq:NP_001189620.1RefSeq:NP_180326.1
SMART:SM00154SMART:SM00259SMR:Q9ZNU9STRING:3702.AT2G27580.1
SUPFAM:SSF118310SUPFAM:SSF57716TAIR:AT2G27580UniGene:At.43983
UniProt:Q9ZNU9
Coordinates (TAIR10) chr2:-:11776640..11777131
Molecular Weight (calculated) 17878.20 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.67
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEHRLQEP RLCANNCGFF GSTATQNLCS KCFRDLQHQE QNSSTAKHAL TQSLAAVGAA ASSSVSPPPP PPADSKEIVE AKSEKRAAAE PEEADGPPQD
101: PKRCLTCRRR VGITGFRCRC GFVFCGTHRY AEQHECSFDF KRMGKDKIAK ANPIVKADKL EKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)