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AT2G27550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.459
vacuole 0.286
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : centroradialis
Curator
Summary (TAIR10)
encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.
Computational
Description (TAIR10)
centroradialis (ATC); CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT5G03840.1); Has 2165 Blast hits to 2165 proteins in 308 species: Archae - 0; Bacteria - 2; Metazoa - 605; Fungi - 111; Plants - 1396; Viruses - 3; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
BioGrid:2654eggNOG:COG1881eggNOG:KOG3346EMBL:AB024712EMBL:AB024714EMBL:AB024715EMBL:AC005824
EMBL:AC006232EMBL:AY065211EMBL:AY096515EMBL:CP002685EnsemblPlants:AT2G27550EnsemblPlants:AT2G27550.1entrez:817302
Gene3D:3.90.280.10GeneID:817302Genevisible:Q9ZNV5GO:GO:0005634GO:GO:0005737GO:GO:0009910GO:GO:0010228
Gramene:AT2G27550.1HOGENOM:HOG000237656InterPro:IPR001858InterPro:IPR008914KEGG:ath:AT2G27550OMA:KHWILANPaxDb:Q9ZNV5
Pfam:PF01161Pfam:Q9ZNV5PhylomeDB:Q9ZNV5PIR:C84674PRIDE:Q9ZNV5PRO:PR:Q9ZNV5PROSITE:PS01220
ProteinModelPortal:Q9ZNV5Proteomes:UP000006548RefSeq:NP_180324.1scanprosite:PS01220SMR:Q9ZNV5STRING:3702.AT2G27550.1SUPFAM:SSF49777
TAIR:AT2G27550tair10-symbols:ATCUniGene:At.352UniProt:Q9ZNV5
Coordinates (TAIR10) chr2:+:11773417..11774509
Molecular Weight (calculated) 19893.80 Da
IEP (calculated) 7.66
GRAVY (calculated) -0.27
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MARISSDPLM VGRVIGDVVD NCLQAVKMTV TYNSDKQVYN GHELFPSVVT YKPKVEVHGG DMRSFFTLVM TDPDVPGPSD PYLREHLHWI VTDIPGTTDV
101: SFGKEIIGYE MPRPNIGIHR FVYLLFKQTR RGSVVSVPSY RDQFNTREFA HENDLGLPVA AVFFNCQRET AARRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)