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AT2G27520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.918
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17490.1); Has 2220 Blast hits to 2176 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2218; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC005824EMBL:AC006232EMBL:AY464585EMBL:AY954803
EMBL:CP002685EnsemblPlants:AT2G27520EnsemblPlants:AT2G27520.1entrez:817298
GeneID:817298Genevisible:Q9ZNQ3Gramene:AT2G27520.1hmmpanther:PTHR32133
hmmpanther:PTHR32133:SF82HOGENOM:HOG000112505InParanoid:Q9ZNQ3InterPro:IPR001810
InterPro:IPR006527InterPro:IPR011043InterPro:IPR017451KEGG:ath:AT2G27520
OMA:MEIWMEIPaxDb:Q9ZNQ3Pfam:PF00646Pfam:PF07734
Pfam:Q9ZNQ3Pfscan:PS50181PhylomeDB:Q9ZNQ3PIR:H84673
PRIDE:Q9ZNQ3PRO:PR:Q9ZNQ3PROSITE:PS50181ProteinModelPortal:Q9ZNQ3
Proteomes:UP000006548RefSeq:NP_565653.1SMART:SM00256SMR:Q9ZNQ3
SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT2G27520
TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.66429UniProt:Q9ZNQ3
Coordinates (TAIR10) chr2:+:11762061..11763104
Molecular Weight (calculated) 40532.10 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.18
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRLDLPWDL VDEILSRLPA TSLGRLRFTC KRWNALFKDP EFITKQFHKA AKQDLVLMLS NFGVYSMSTN LKEIPNNIEI AQVFHCNGLL LCSTEEGNKT
101: KLVVVNPCTG QTRWIEPRTD YNYNHDIALG YGNNSTKKSY DSYKILRITY GCKLVEIFEL KSNSWRVLSK VHPNVEKHYY GGVSFKGNTY WLSYTKFNIL
201: SFDFTTETFR SVPLPFLYQD GFVTLALSVV REEQLLLLRS RFDMGQVGIW MCNKIDTETV LSWSKSFTLE FDSLRDLPVM SILRIFIEED KKVIVVDCDD
301: RWKENMIYIV GKNGFKKLSY EKDRSNLWRL PFFFSYVPSL VGLYPPM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)