suba logo
AT2G27500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : nucleus 15610358
AmiGO : plasma membrane 14517339
SwissProt : cytosol 16381842
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : nucleus 15610358
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 2143 Blast hits to 2127 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 12; Plants - 2120; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G27500-MONOMERBioCyc:ARA:GQT-929-MONOMERBioCyc:ARA:GQT-930-MONOMERCAZy:GH17
EC:3.2.1.39eggNOG:ENOG410IH5GeggNOG:ENOG410YA4NEMBL:AC006232
EMBL:AY065085EMBL:AY065273EMBL:AY084587EMBL:AY096525
EMBL:CP002685EnsemblPlants:AT2G27500EnsemblPlants:AT2G27500.1entrez:817295
Gene3D:3.20.20.80GeneID:817295Genevisible:Q9ZQG9GO:GO:0005576
GO:GO:0005618GO:GO:0005634GO:GO:0005737GO:GO:0005975
GO:GO:0006952GO:GO:0042973GO:GO:0046658GO:GO:0071555
hmmpanther:PTHR32227hmmpanther:PTHR32227:SF70HOGENOM:HOG000238220InParanoid:Q9ZQG9
InterPro:IPR000490InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT2G27500
OMA:PHISKTRPaxDb:Q9ZQG9Pfam:PF00332Pfam:Q9ZQG9
PhylomeDB:Q9ZQG9PIR:F84673PRIDE:Q9ZQG9PRO:PR:Q9ZQG9
ProteinModelPortal:Q9ZQG9Proteomes:UP000006548RefSeq:NP_001031432.1RefSeq:NP_565652.1
RefSeq:NP_973548.1SMR:Q9ZQG9STRING:3702.AT2G27500.1SUPFAM:SSF51445
TAIR:AT2G27500TMHMM:TMhelixUniGene:At.24289UniProt:Q9ZQG9
Coordinates (TAIR10) chr2:-:11752364..11753844
Molecular Weight (calculated) 44076.20 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.07
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MATHSLSFFF RVLLLLFLTL SERIKGQGVG INYGQIANNL PSPARVAVLL RSLNITRVKL YDADPNVLFS FSNSQVDFMI GLGNEYLQNM STDPTKAQDW
101: LQQRLEPHIS KTRITSIVVG NEIFKTNDHV LIQSLLPAMK SVYAALTNLG LEKQVTVTSA HSLDILSTSY PPSSGSFKEE FIQYLQPLLD FHSQIESPFL
201: INAYPFFAYK DSPKEVPLEY VLFQPNQGMV DPNTNLHYDN MLFAQVDALY SAIKTLGHTD IEVRISETGW PSKGDENEIG ASPENAALYN GNLLKLIQQR
301: KGTPAKQSVP IDVYVFALFN ENLKPGPVSE RNYGLFYPDG KPVYNVGMQG YLPDIIYTSR ATTIKILNLW RVVMGLAVAW FILDMGDKMR MR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)