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AT2G27470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear factor Y, subunit B11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit B11 (NF-YB11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B1 (TAIR:AT2G38880.7); Has 148542 Blast hits to 60498 proteins in 2540 species: Archae - 708; Bacteria - 15552; Metazoa - 38569; Fungi - 16830; Plants - 7103; Viruses - 1761; Other Eukaryotes - 68019 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111QSWeggNOG:KOG0870EMBL:AC006232EMBL:BT004083EMBL:CP002685EnsemblPlants:AT2G27470EnsemblPlants:AT2G27470.1
entrez:817292Gene3D:1.10.20.10GeneID:817292GO:GO:0003700GO:GO:0005634GO:GO:0006355Gramene:AT2G27470.1
hmmpanther:PTHR11064HOGENOM:HOG000154037InterPro:IPR003958InterPro:IPR009072KEGG:ath:AT2G27470KO:K02326ncoils:Coil
OMA:NTTIQKDPfam:PF00808PhylomeDB:Q9ZQH2PIR:C84673Proteomes:UP000006548RefSeq:NP_180316.1SMR:Q9ZQH2
STRING:3702.AT2G27470.1SUPFAM:SSF47113TAIR:AT2G27470tair10-symbols:NF-YB11UniGene:At.26474UniGene:At.48523UniProt:Q9ZQH2
Coordinates (TAIR10) chr2:-:11745196..11746375
Molecular Weight (calculated) 30551.30 Da
IEP (calculated) 3.89
GRAVY (calculated) -1.50
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)