AT2G27460.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.500 golgi 0.500 ASURE: endoplasmic reticulum,golgi What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : sec23/sec24 transport family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
sec23/sec24 transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G07100.1); Has 1620 Blast hits to 1606 proteins in 237 species: Archae - 0; Bacteria - 2; Metazoa - 540; Fungi - 539; Plants - 300; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:11740670..11744867 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82589.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.56 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 745 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVRATVSRF PIDSDAQEAS GLPWGLTVTP FAAKDENGIG PACGSNGHLL PRCENCYAYF NTYCELDQWA WNCSLCGTLN GLPSDAIARY SNPHSIPEMT 101: SSFIDLEMPL DGSEEEMTQA RPVYVAAIDI SSSEEFLELT KSALLAALEA LSPGALFGLV TFSHKIGLYD VQGPIPVVKN VFIPPDGESS LSLELEDVMP 201: LLQFLAPVET CKDRIAAALE TLRPITSWER SAGAGQGMDS VLMGGRGFGT AMEALFNYLG SEFGNTFALA RVFAFLSGPP DYGRGQLDTS RYGEQYASKR 301: VDADRALLPE QTPFYKDLAT IAVQSGVCVD LFAVTNEYTD LASLKFLSIE SGGSLFLYSS TDDSTLPQDM FRMLNRPYAF NCVLRLRTST EFKPGNSFGH 401: FFPDPQYENL QHIICCDSYA TYAYDFEFAD NTGFSRHSGE QPVVQIAFQY TVVVPPEGLS NSEMSSSSRG KHTLQRRLRI RTMQFGTAHN INEIYDSVDH 501: EVVLSLLVHK VILASLEDGV REGRALLHDW LVILTAQYND AFNLVQYKNG NKSMSSQIDI TFSQCPQLEP LPRLVFALLR NPLLRFHEEG VHPDYRIYLQ 601: CLFSVLDPSS LHCGIYPALM SYSTPDTLAY PRHSLSRAAL ITSGSPIFFL DAYTTLIVFY SSTADPSIPF PPPQDCLLRQ TINKVKQERS ITPKLVFIRG 701: GRDDATVFEN YLIEEQDVDG NGFASAMGFV SFLDDISQRV TEYMK |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)