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AT2G27460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sec23/sec24 transport family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sec23/sec24 transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G07100.1); Has 1620 Blast hits to 1606 proteins in 237 species: Archae - 0; Bacteria - 2; Metazoa - 540; Fungi - 539; Plants - 300; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5028eggNOG:KOG1985EMBL:AC006232EMBL:AY054495EMBL:BT010339EMBL:CP002685EnsemblPlants:AT2G27460
EnsemblPlants:AT2G27460.1entrez:817291Gene3D:3.40.50.410GeneID:817291GO:GO:0006886GO:GO:0006888GO:GO:0008270
GO:GO:0030127Gramene:AT2G27460.1hmmpanther:PTHR13803hmmpanther:PTHR13803:SF10HOGENOM:HOG000241464InterPro:IPR002035InterPro:IPR006895
InterPro:IPR006896InterPro:IPR006900KEGG:ath:AT2G27460OMA:HLLPRCEPfam:PF04810Pfam:PF04811Pfam:PF04815
PhylomeDB:Q9ZQH3PIR:B84673ProMEX:Q9ZQH3Proteomes:UP000006548RefSeq:NP_565651.1SMR:Q9ZQH3STRING:3702.AT2G27460.1
SUPFAM:SSF53300SUPFAM:SSF81811SUPFAM:SSF81995SUPFAM:SSF82919TAIR:AT2G27460UniGene:At.26474UniGene:At.48523
UniProt:Q9ZQH3
Coordinates (TAIR10) chr2:+:11740670..11744867
Molecular Weight (calculated) 82589.90 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.08
Length 745 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVRATVSRF PIDSDAQEAS GLPWGLTVTP FAAKDENGIG PACGSNGHLL PRCENCYAYF NTYCELDQWA WNCSLCGTLN GLPSDAIARY SNPHSIPEMT
101: SSFIDLEMPL DGSEEEMTQA RPVYVAAIDI SSSEEFLELT KSALLAALEA LSPGALFGLV TFSHKIGLYD VQGPIPVVKN VFIPPDGESS LSLELEDVMP
201: LLQFLAPVET CKDRIAAALE TLRPITSWER SAGAGQGMDS VLMGGRGFGT AMEALFNYLG SEFGNTFALA RVFAFLSGPP DYGRGQLDTS RYGEQYASKR
301: VDADRALLPE QTPFYKDLAT IAVQSGVCVD LFAVTNEYTD LASLKFLSIE SGGSLFLYSS TDDSTLPQDM FRMLNRPYAF NCVLRLRTST EFKPGNSFGH
401: FFPDPQYENL QHIICCDSYA TYAYDFEFAD NTGFSRHSGE QPVVQIAFQY TVVVPPEGLS NSEMSSSSRG KHTLQRRLRI RTMQFGTAHN INEIYDSVDH
501: EVVLSLLVHK VILASLEDGV REGRALLHDW LVILTAQYND AFNLVQYKNG NKSMSSQIDI TFSQCPQLEP LPRLVFALLR NPLLRFHEEG VHPDYRIYLQ
601: CLFSVLDPSS LHCGIYPALM SYSTPDTLAY PRHSLSRAAL ITSGSPIFFL DAYTTLIVFY SSTADPSIPF PPPQDCLLRQ TINKVKQERS ITPKLVFIRG
701: GRDDATVFEN YLIEEQDVDG NGFASAMGFV SFLDDISQRV TEYMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)