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AT2G27370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G36100.1); Has 591 Blast hits to 591 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 591; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DIP:DIP-59179NeggNOG:ENOG410IYVBeggNOG:ENOG410YJECEMBL:AC006232
EMBL:AC006233EMBL:AK227595EMBL:BT003063EMBL:CP002685
EnsemblPlants:AT2G27370EnsemblPlants:AT2G27370.1entrez:817280GeneID:817280
Genevisible:Q9ZQI2GO:GO:0005829GO:GO:0005886GO:GO:0007043
GO:GO:0016021GO:GO:0016226GO:GO:0042545GO:GO:0042803
GO:GO:0048226GO:GO:0051536Gramene:AT2G27370.1hmmpanther:PTHR11615
hmmpanther:PTHR11615:SF116HOGENOM:HOG000237690InParanoid:Q9ZQI2InterPro:IPR006459
InterPro:IPR006702iPTMnet:Q9ZQI2KEGG:ath:AT2G27370OMA:AGWKRGV
PaxDb:Q9ZQI2Pfam:PF04535Pfam:Q9ZQI2PhylomeDB:Q9ZQI2
PIR:B84672PRIDE:Q9ZQI2PRO:PR:Q9ZQI2Proteomes:UP000006548
RefSeq:NP_180305.1STRING:3702.AT2G27370.1TAIR:AT2G27370TIGRfam:TIGR01569
TIGRFAMs:TIGR01569TMHMM:TMhelixUniGene:At.38776UniProt:Q9ZQI2
Coordinates (TAIR10) chr2:-:11708628..11709905
Molecular Weight (calculated) 24162.90 Da
IEP (calculated) 8.93
GRAVY (calculated) 0.38
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)