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AT2G27360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28610.2); Has 3560 Blast hits to 3506 proteins in 242 species: Archae - 0; Bacteria - 391; Metazoa - 0; Fungi - 2; Plants - 3156; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G27360-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IKJ0
EMBL:AC006232EMBL:AC006233EMBL:AK176905EMBL:CP002685
EnsemblPlants:AT2G27360EnsemblPlants:AT2G27360.1entrez:817279Gene3D:3.40.50.1110
GeneID:817279Genevisible:Q9ZQI3GO:GO:0005576GO:GO:0016042
GO:GO:0016788Gramene:AT2G27360.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF189
HOGENOM:HOG000237651InParanoid:Q9ZQI3InterPro:IPR001087InterPro:IPR013830
KEGG:ath:AT2G27360OMA:MGARTFLPaxDb:Q9ZQI3Pfam:PF00657
Pfam:Q9ZQI3PhylomeDB:Q9ZQI3PIR:A84672PRIDE:Q9ZQI3
PRO:PR:Q9ZQI3ProteinModelPortal:Q9ZQI3Proteomes:UP000006548RefSeq:NP_180304.1
STRING:3702.AT2G27360.1SUPFAM:SSF52266TAIR:AT2G27360UniGene:At.38777
UniProt:Q9ZQI3
Coordinates (TAIR10) chr2:+:11706233..11707905
Molecular Weight (calculated) 43856.20 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.12
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MASQDCHMLL SFFISTFLIT VVTSQTRCRN FKSIISFGDS ITDTGNLLGL SSPNDLPESA FPPYGETFFH HPSGRFSDGR LIIDFIAEFL GIPHVPPFYG
101: SKNGNFEKGV NFAVGGATAL ECSVLEEKGT HCSQSNISLG NQLKSFKESL PYLCGSSSPD CRDMIENAFI LIGEIGGNDY NFPLFDRKNI EEVKELVPLV
201: ITTISSAISE LVDMGARTFL VPGNFPLGCS VAYLTLYETP NKEEYNPLTG CLTWLNDFSV YHNEQLQAEL KRLRNLYPHV NIIYGDYYNT LLRLMQEPSK
301: FGLMDRPLPA CCGLGGPYNF TFSIKCGSKG VEYCSDPSKY VNWDGIHMTE AAYKWISEGV LTGPYAIPPF NWSCLDSKIK NNESLHTQYS LMNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)