AT2G27350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : OTU-like cysteine protease family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 2113 Blast hits to 1438 proteins in 217 species: Archae - 0; Bacteria - 20; Metazoa - 656; Fungi - 244; Plants - 357; Viruses - 15; Other Eukaryotes - 821 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11699780..11702363 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55276.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 505 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRILVQRGS SGSSSNSSRP SSSSSSSSGS ETQINNNIPV PPVTIDEEIT DEKQEEVTVV EKAECSDAKD VAVDSDEPAD REDDEGLVVA ENVHVQSEGI 101: DCDSPVSGGS NSDSPPVPAP PPKPSSTVNP GSNRSVLGSF GALRIGPTRR AAGPRSLVSS RSSPTGSHPS SPRSHSENEG YNSSDEHMPC YVPSHPGSGL 201: EREHQFEAEI RYSKGFEIRR MLEDGNCLFR AVADQVYGDS EAYDLARQMC MDYMEQERDH FSQFITEGFT SYLKRKRRDK VYGNNVEIQA LAEMYNRPIH 301: IYSYSTEPIN IFQGNYSTDT PPIRLSYHHG NHYNSLVDPH RLTVGAGLGF SSLSGRHVDK EQVKAAIKAQ QEHQIDNALL AEGRFYSDLE LTEKEIERSV 401: MEASRAEYLM EWSKPRIGPK ESSTSNAETS SSGARPSGSD SKPAEAVKEK TVLSSSIEMV LSMGFSYAQA MEAYSIFGDD VDSMVCYVLE TSCGGNNRRK 501: GKATE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)