suba logo
AT2G27285.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Coiled-coil domain-containing protein 55 (DUF2040)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Coiled-coil domain-containing protein 55 (DUF2040); EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2040, coiled-coil (InterPro:IPR018612); BEST Arabidopsis thaliana protein match is: Coiled-coil domain-containing protein 55 (DUF2040) (TAIR:AT2G27280.1); Has 40028 Blast hits to 25465 proteins in 1773 species: Archae - 338; Bacteria - 5536; Metazoa - 16890; Fungi - 2992; Plants - 1451; Viruses - 173; Other Eukaryotes - 12648 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z5A1eggNOG:KOG2117EMBL:AC006233EMBL:AK118763EMBL:AK175231EMBL:AK175237EMBL:AY085624
EMBL:BT005450EMBL:CP002685EnsemblPlants:AT2G27285EnsemblPlants:AT2G27285.1entrez:817271GeneID:817271Gramene:AT2G27285.1
hmmpanther:PTHR30060hmmpanther:PTHR30060:SF0HOGENOM:HOG000240822InterPro:IPR018612KEGG:ath:AT2G27285KO:K13206ncoils:Coil
OMA:ETHERVSPfam:PF09745PhylomeDB:Q8S8I5Proteomes:UP000006548RefSeq:NP_565644.1STRING:3702.AT2G27285.1TAIR:AT2G27285
UniGene:At.13630UniGene:At.24034UniProt:Q8S8I5
Coordinates (TAIR10) chr2:-:11676079..11677897
Molecular Weight (calculated) 38086.80 Da
IEP (calculated) 8.98
GRAVY (calculated) -1.43
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKYGLQIRA PSQKKQSSSR PPLRPASIFD EEEDHDVEKE ISRQATKTKA HKEIEEQHKK ALEEDPSAFS YDEVYDDMKQ KAVLPRMQDR EERKPRYIQN
101: LMKQAERREK EHEIVYERKL AKEREKDEHL FSDKEKFVTG AYKRKLEEQK KWLAEERLRE LREERDDVTK KKDLSDFYFN IGKNVAFGAR EVEAKEAEKL
201: EEQRKAEKLE EQRKAEKLEE LRKEVTRVEK KRKSPEKEVS PDSGEFGSSR SKSLEPLEAE QAVSEKEMGS DGTEERKSSI KEAAKEVPKA INDQKRREDA
301: IAAAKERFLA RKKAKIEEYV QLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)