AT2G27280.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Coiled-coil domain-containing protein 55 (DUF2040) | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Coiled-coil domain-containing protein 55 (DUF2040); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2040, coiled-coil (InterPro:IPR018612); BEST Arabidopsis thaliana protein match is: Coiled-coil domain-containing protein 55 (DUF2040) (TAIR:AT2G27285.1); Has 17369 Blast hits to 12141 proteins in 914 species: Archae - 89; Bacteria - 1500; Metazoa - 7358; Fungi - 1475; Plants - 656; Viruses - 55; Other Eukaryotes - 6236 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:11673826..11675613 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49632.70 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 9.65 | ||||||||||||||||||||||||||||
GRAVY (calculated) | -1.13 | ||||||||||||||||||||||||||||
Length | 427 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEEARLSTLP FSASFNPSNP LGFLENVLDF IGKESNFLRK DTAEKEITDA VTTAKERLRE TEKKTESMDV EKVRPSTLPF NASFDPSDPL GFLEKVFEFV 101: GKKSNFLVKD KAVNAIITAV TDAKERLKEE EKESVKQATV KIKKYGLQIR APSQKKQSSS RPLLRTASIF GEDDEENDVE KEISRQASKT KSLKKIEKQH 201: KKAIEEDPSA FAYDEVYDDI KHEAALPRMQ DREEHKSRYI QHIMKQAERR EKEHEIVYER KLAKERAKDE HLYSDKEKFV TGPFKRKLEE QKKWLEEERL 301: RELREERDDV TKKNDLSEFY INIGKNVAFG ARDIEAREAG RLKELRKVDR LEELRKEETR KEKKRKSPEK EVSPDSGDFG LSSKKSVKPQ DASIKEEAKE 401: TQKATREDAI ATAKERFLSR KKAKIEK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)