AT2G27200.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.976 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G08410.1); Has 7321 Blast hits to 7198 proteins in 1972 species: Archae - 116; Bacteria - 4700; Metazoa - 639; Fungi - 504; Plants - 290; Viruses - 0; Other Eukaryotes - 1072 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:11625449..11627959 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60761.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 537 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKNEKTSLG RALVKHHNHM IQETKEKGKS YKDQHKKVLE SVTEVSDIDA IIEQAEEAER LFAIHHDSAT PVPINMDTGS SSSGITAKEW KEQRMREEAL 101: HASSLQVPRR PHWTPKMNVE KLDANEKQAF LTWRRKLASL EENEKLVLTP FEKNLDIWRQ LWRVLERSDL IVMVVDARDP LFYRCPDLEA YAQEIDEHKK 201: TMLLVNKADL LPSYVREKWA EYFSRNNILF VFWSAKAATA TLEGKPLKEQ WRAPDTTQKT DNPAVKVYGR DDLLDRLKLE ALEIVKMRKS RGVSATSTES 301: HCEQVVVGFV GYPNVGKSST INALVGQKRT GVTSTPGKTK HFQTLIISED LMLCDCPGLV FPSFSSSRYE MVASGVLPID RMTEHLEAIK VVAELVPRHA 401: IEDVYNISLP KPKSYEPQSR PPLASELLRT YCLSRGYVAS SGLPDETRAA RQILKDYIEG KLPHFAMPPE ITRDDENETA DDTLGAETRE GSQTEKKGEE 501: APSLGLDQVL DDLSSFDLAN GLVSSKTKQH KKSHRKQ |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)