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AT2G27100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2 zinc-finger protein SERRATE (SE)
Curator
Summary (TAIR10)
Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia.
Computational
Description (TAIR10)
SERRATE (SE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, nuclear speck, nucleolus, nucleus, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Arsenite-resistance protein 2 (InterPro:IPR007042), Protein of unknown function DUF3546 (InterPro:IPR021933), Zinc finger, C2H2-type (InterPro:IPR007087); Has 5797 Blast hits to 4596 proteins in 474 species: Archae - 2; Bacteria - 583; Metazoa - 2822; Fungi - 981; Plants - 712; Viruses - 137; Other Eukaryotes - 560 (source: NCBI BLink).
Protein Annotations
BioGrid:2604DIP:DIP-58979NeggNOG:ENOG410XR8SeggNOG:KOG2295EMBL:AC005623EMBL:AF311221EMBL:AF428305
EMBL:AY039915EMBL:AY142569EMBL:AY143937EMBL:CP002685EnsemblPlants:AT2G27100EnsemblPlants:AT2G27100.1entrez:817252
EvolutionaryTrace:Q9ZVD0GeneID:817252Genevisible:Q9ZVD0GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0005730
GO:GO:0005829GO:GO:0006355GO:GO:0006397GO:GO:0008380GO:GO:0009507GO:GO:0010267GO:GO:0010445
GO:GO:0016568GO:GO:0016607GO:GO:0031053GO:GO:0046872GO:GO:0048367GO:GO:0048509GO:GO:2000011
Gramene:AT2G27100.1hmmpanther:PTHR13165HOGENOM:HOG000082562InParanoid:Q9ZVD0IntAct:Q9ZVD0InterPro:IPR007042InterPro:IPR007087
InterPro:IPR021933iPTMnet:Q9ZVD0KEGG:ath:AT2G27100ncoils:CoilOMA:RNEHARKPaxDb:Q9ZVD0PDB:3AX1
PDBsum:3AX1Pfam:PF04959Pfam:PF12066Pfam:Q9ZVD0PhylomeDB:Q9ZVD0PIR:G84668PRIDE:Q9ZVD0
PRO:PR:Q9ZVD0PROSITE:PS00028ProteinModelPortal:Q9ZVD0Proteomes:UP000006548RefSeq:NP_565635.1scanprosite:PS00028SMR:Q9ZVD0
STRING:3702.AT2G27100.1TAIR:AT2G27100tair10-symbols:SEUniGene:At.25511UniProt:Q9ZVD0
Coordinates (TAIR10) chr2:+:11572587..11576357
Molecular Weight (calculated) 81102.40 Da
IEP (calculated) 8.70
GRAVY (calculated) -1.19
Length 720 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)