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AT2G27080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.926
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT5G21130.1); Has 1062 Blast hits to 1061 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1062; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWKBeggNOG:ENOG410YIDDEMBL:AC005623EMBL:AF370591EMBL:AK227800EMBL:AY052291EMBL:AY061921
EMBL:CP002685EnsemblPlants:AT2G27080EnsemblPlants:AT2G27080.1EnsemblPlants:AT2G27080.2entrez:817250GeneID:817250GO:GO:0009506
GO:GO:0016021Gramene:AT2G27080.1Gramene:AT2G27080.2hmmpanther:PTHR31852hmmpanther:PTHR31852:SF0HOGENOM:HOG000238384IntAct:Q9ZVD2
InterPro:IPR004864KEGG:ath:AT2G27080OMA:NARLFQHPfam:PF03168PhylomeDB:Q9ZVD2PIR:E84668Proteomes:UP000006548
RefSeq:NP_565634.1RefSeq:NP_973540.1STRING:3702.AT2G27080.1TAIR:AT2G27080TMHMM:TMhelixUniGene:At.68415UniProt:Q9ZVD2
Coordinates (TAIR10) chr2:+:11566383..11567165
Molecular Weight (calculated) 28977.10 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.19
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)