suba logo
AT2G27040.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Argonaute family protein
Curator
Summary (TAIR10)
AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.
Computational
Description (TAIR10)
ARGONAUTE 4 (AGO4); FUNCTIONS IN: siRNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear euchromatin, nucleolus, Cajal body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT5G21150.1); Has 1929 Blast hits to 1875 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 1009; Fungi - 290; Plants - 478; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Protein Annotations
BioGrid:2598DIP:DIP-53402NeggNOG:ENOG410XP07eggNOG:KOG1041EMBL:AC005623EMBL:AY035081EMBL:AY051033
EMBL:CP002685EnsemblPlants:AT2G27040EnsemblPlants:AT2G27040.1EnsemblPlants:AT2G27040.2entrez:817246Gene3D:3.30.420.10GeneID:817246
Genevisible:Q9ZVD5GO:GO:0003682GO:GO:0005654GO:GO:0005719GO:GO:0005730GO:GO:0006306GO:GO:0006342
GO:GO:0006351GO:GO:0006417GO:GO:0009816GO:GO:0015030GO:GO:0016458GO:GO:0019048GO:GO:0030529
GO:GO:0031048GO:GO:0035197GO:GO:0051567Gramene:AT2G27040.1Gramene:AT2G27040.2hmmpanther:PTHR22891hmmpanther:PTHR22891:SF20
HOGENOM:HOG000116043InParanoid:Q9ZVD5IntAct:Q9ZVD5InterPro:IPR003100InterPro:IPR003165InterPro:IPR012337InterPro:IPR014811
InterPro:IPR032472InterPro:IPR032473InterPro:IPR032474iPTMnet:Q9ZVD5KEGG:ath:AT2G27040KO:K11593MINT:MINT-7222821
MoonProt:Q9ZVD5OMA:RVDGMIDPaxDb:Q9ZVD5Pfam:PF02170Pfam:PF02171Pfam:PF08699Pfam:PF16486
Pfam:PF16487Pfam:PF16488Pfam:Q9ZVD5Pfscan:PS50821Pfscan:PS50822PhylomeDB:Q9ZVD5PIR:A84668
PRIDE:Q9ZVD5PRO:PR:Q9ZVD5PROSITE:PS50821PROSITE:PS50822ProteinModelPortal:Q9ZVD5Proteomes:UP000006548Reactome:R-ATH-426486
Reactome:R-ATH-426496Reactome:R-ATH-5578749RefSeq:NP_001189613.1RefSeq:NP_565633.1SMART:SM00950SMART:SM01163SMR:Q9ZVD5
STRING:3702.AT2G27040.1SUPFAM:SSF101690SUPFAM:SSF53098TAIR:AT2G27040tair10-symbols:AGO4tair10-symbols:OCP11UniGene:At.13165
UniProt:Q9ZVD5
Coordinates (TAIR10) chr2:-:11536795..11541503
Molecular Weight (calculated) 102846.00 Da
IEP (calculated) 9.19
GRAVY (calculated) -0.40
Length 924 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)