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AT2G26990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : proteasome family protein
Curator
Summary (TAIR10)
Represses photomorphogenesis and induces skotomorphogenesis in the dark.
Computational
Description (TAIR10)
FUSCA 12 (FUS12); INVOLVED IN: cullin deneddylation, photomorphogenesis, protein catabolic process; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: non-ATPase subunit 9 (TAIR:AT1G29150.1); Has 881 Blast hits to 877 proteins in 239 species: Archae - 2; Bacteria - 9; Metazoa - 323; Fungi - 235; Plants - 190; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
BioGrid:2593eggNOG:COG5159eggNOG:KOG1464EMBL:AC005623EMBL:AF395058EMBL:AY050437EMBL:AY087622
EMBL:AY133536EMBL:CP002685EnsemblPlants:AT2G26990EnsemblPlants:AT2G26990.1entrez:817241Gene3D:1.10.10.10Gene3D:1.25.40.10
GeneID:817241Genevisible:Q8W207GO:GO:0005634GO:GO:0005829GO:GO:0007275GO:GO:0008180GO:GO:0009585
GO:GO:0010388GO:GO:0030163Gramene:AT2G26990.1hmmpanther:PTHR10678HOGENOM:HOG000194333InParanoid:Q8W207IntAct:Q8W207
InterPro:IPR000717InterPro:IPR011990InterPro:IPR011991iPTMnet:Q8W207KEGG:ath:AT2G26990KO:K12176OMA:RNNIMDD
PaxDb:Q8W207Pfam:PF01399Pfam:Q8W207PhylomeDB:Q8W207PIR:D84667PRIDE:Q8W207PRO:PR:Q8W207
ProteinModelPortal:Q8W207Proteomes:UP000006548Reactome:R-ATH-5696394Reactome:R-ATH-6781823RefSeq:NP_565632.1SMART:SM00088SMR:Q8W207
STRING:3702.AT2G26990.1SUPFAM:SSF46785TAIR:AT2G26990tair10-symbols:ATCSN2tair10-symbols:COP12tair10-symbols:CSN2tair10-symbols:FUS12
UniGene:At.13162UniProt:Q8W207
Coordinates (TAIR10) chr2:-:11519684..11522412
Molecular Weight (calculated) 51189.30 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.61
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)