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AT2G26950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At2g26950-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myb domain protein 104
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 104 (MYB104); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 81 (TAIR:AT2G26960.1); Has 8267 Blast hits to 7915 proteins in 468 species: Archae - 0; Bacteria - 0; Metazoa - 560; Fungi - 403; Plants - 5591; Viruses - 3; Other Eukaryotes - 1710 (source: NCBI BLink).
Protein Annotations
BioGrid:2588eggNOG:COG5147eggNOG:KOG0048EMBL:AC005168
EMBL:AC005623EMBL:CP002685EMBL:DR750464EMBL:U26934
EnsemblPlants:AT2G26950EnsemblPlants:AT2G26950.1entrez:817236Gene3D:1.10.10.60
GeneID:817236Genevisible:Q9SM27GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT2G26950.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF475HOGENOM:HOG000006120InParanoid:Q9SM27
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT2G26950
KO:K09422OMA:FGAEQYNPaxDb:Q9SM27Pfam:PF00249
Pfam:Q9SM27Pfscan:PS51294PIR:H84666PIR:T02640
PRO:PR:Q9SM27PROSITE:PS51294ProteinModelPortal:Q9SM27Proteomes:UP000006548
RefSeq:NP_180263.5SMART:SM00717SMR:Q9SM27STRING:3702.AT2G26950.1
SUPFAM:SSF46689TAIR:AT2G26950tair10-symbols:AtMYB104tair10-symbols:MYB104
UniGene:At.52930UniProt:Q9SM27
Coordinates (TAIR10) chr2:-:11500721..11502073
Molecular Weight (calculated) 43514.90 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.72
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MIQDQANDLL AMKKTFTKSK WKPEEDRILK DYVIQYGDRT WTHVPKRTGL PHNPASCRFR WMNHLKPSLK KGPFTDEEEK RVLQLHAVLG NKWSQMAREF
101: PGRTDNEIKN FWNARRMRLK GKGLPVYPDE VREQAIRTAA QYGVKVELLN AHYSQDSLMA GNVEKPQELN NLALNQCSPY YQSTLANVQP SRNRVMEPET
201: TFPFTGGSAM NEQNPTLLCN PYVESTQEQL PDSHLFGNVT YSSPPMPLIH EVENLELPSF QGFDFHEEPS SFGAEQYNPM LNLEPHNTLV QSPLIGQTPT
301: DFPSSFYDEL LDELLESVVN GSLGEIPKTD TSSESQLFQS SLRSHTDATP DIANTTGYVG SNERNTTNDD DWIRLLLDEG FI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)