AT2G26940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2H2-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: leaf whorl, sepal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 type zinc finger transcription factor family (TAIR:AT5G56200.1); Has 426 Blast hits to 409 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 5; Plants - 225; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11496518..11497378 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33351.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.13 | ||||||||||||||||||||||||||||||||||||
| Length | 286 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRTRDLYGD ESSSSESEEF HREKIRVKVK LPEERSEDED ESPQPQRKHF CVICEKQFSS GKAYGGHVRI HSIEYNNKGK MKKMKKMKLK KKKKRKIGLV 101: KKEKEKEIDL ARTDVEGKIR CCLCGKEFQT MHSLFGHMRR HPDRTWKGIR PPPPSEKFNL SYLDDDVDDE DEDDDDVMSR SMMMSDVPED VQGAACILMM 201: LSYASRNYWA GIEESPKSEV RSSSFYKDDE GKDKVLGDSR MDEKKGLIVD MKIKMEMEVK VNSPRDEAKR SLGFDLNQPP YHEDHP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)