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AT2G26890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20374526 (2010): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock N-terminal domain-containing protein
Curator
Summary (TAIR10)
GRV2 has sequence similarity to the C. elegans protein RME-8 which is involved in endocytosis. grv2 mutants result in a reduction in gravitropic response in hypocotyls and shoots but do not affect root gravitropism. The mutants are defective in amyloplast sedimentation.
Computational
Description (TAIR10)
GRAVITROPISM DEFECTIVE 2 (GRV2); FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: in 10 processes; LOCATED IN: in 6 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:2582eggNOG:ENOG410XRI2eggNOG:KOG1789EMBL:AC005168EMBL:CP002685EnsemblPlants:AT2G26890EnsemblPlants:AT2G26890.1
entrez:817230Gene3D:1.10.287.110Gene3D:1.25.10.10GeneID:817230Genevisible:F4IVL6GO:GO:0000578GO:GO:0005770
GO:GO:0005773GO:GO:0005774GO:GO:0005783GO:GO:0005794GO:GO:0005802GO:GO:0006623GO:GO:0006897
GO:GO:0007032GO:GO:0007033GO:GO:0009638GO:GO:0009660GO:GO:0009793GO:GO:0009959GO:GO:0031902
GO:GO:0042594GO:GO:0043231GO:GO:0045324GO:GO:0051301Gramene:AT2G26890.1hmmpanther:PTHR36983HOGENOM:HOG000243604
InParanoid:F4IVL6InterPro:IPR001623InterPro:IPR011989InterPro:IPR016024InterPro:IPR025640iPTMnet:F4IVL6KEGG:ath:AT2G26890
KO:K09533ncoils:CoilOMA:IPRISWNPaxDb:F4IVL6Pfam:F4IVL6Pfam:PF00226Pfam:PF14237
Pfscan:PS50076PIR:T02646PRIDE:F4IVL6PRO:PR:F4IVL6PROSITE:PS50076Proteomes:UP000006548RefSeq:NP_180257.3
SMART:SM00271STRING:3702.AT2G26890.1SUPFAM:SSF46565SUPFAM:SSF48371TAIR:AT2G26890tair10-symbols:GRV2tair10-symbols:KAM2
UniGene:At.12880UniGene:At.67106UniProt:F4IVL6
Coordinates (TAIR10) chr2:-:11462327..11473841
Molecular Weight (calculated) 279089.00 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.07
Length 2554 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSVSRGAVA STTGGAVEEP EYLARYLVVK HSWRGRYKRI LCISSGGIVT LDPNTLAVTN SYDTGSNFDG ASPLVGRDEN TESVGGEFTV NVRTDGKGKF
0101: KAMKFSSRCR ASILTELYRL RWNQIRPVAE FQVLHLRRRN AEWVPYKLKI TFVGLELVDS KSGNSRWILD FRDMGSPAII LLSDAYRTKS ADSAGFVLCP
0201: MYGRKSKAFR AAPGTTNSSI VASLAKTAKS MVGVFLSVDD SQLLTVSEYM TRRAKEAVGA EETPNGWWSV TRLRSAAHGT LNMPGLSLAI GPKGGLGEHG
0301: DAVALQLILT KASLVERRID NYEVVIVRPL SSVSSLVRFA EEPQMFAIEF SDGCPVLVYA SISRDNLLAA ILDTLQTEGH CPIPVLPRLT MPGHRIDPPC
0401: GRVSLISGPQ HLVADLETCS LHLKHLAAAA KDAVAEGGSV PGCRARLWRR IREFNACIPY TGVPANSEVP EVTLMALITM LPSTPNLPVD APPLPPPSPK
0501: AAATVIGFVT CLRRLLSSRS AASHIMSFPA AVNRIMGLLR NGSEGVAAEA AGLIASLIGG WSADLSTAPD SRGEKHATIM HTKSVLFAQQ GYVTILVNRL
0601: KPMSVSPLFS MAIVEVFEAM VCDPHGETTQ YTVFVELLRQ IAALRRRLFA LFAHPAESVR ETIAVIMRTI AEEDAIAAES MRDAALRDGA LLRHLLNAFS
0701: LPASERREVS RQLVALWADS YQPALDLLSR VLPPGLVAYL HTRPDDVVDD TDQEGSSTNR RQKRLLQQRR GRIAKGMGAQ DIPLPPGNNV EAGDAAKHMS
0801: ANASVPDNFQ RRAADSSSEA SNPQASAFPG VDSTIAGVSQ NGYPAFASVT TNANGHEQPE TNASDVVGSD PNLYGIQNSV LPAPAQVIVE STAVGSGKLL
0901: LNWREFWRAF GLDHNRADLI WNERTRQELI EALKAEVHNL DVEKERTEDI SPGDVEATTG QEIIPRISWN YSEFSVSYRS LSKEVCVGQY YLRLLLESGN
1001: AGKAQDFPLR DPVAFFRALY HRFQCDADMG LTIDGAVPDE LGSSGDWCDM SRLDGFGGGG GASVRELCAR AMAIVYEQHY NTIGPFEGTA HITALIDRTN
1101: DRALRHRLLL LLKALVKVLL NVEGCVVVGG CVLAVDLLTV VHENSERTPI PLQSNLIAAT AFMEPPKEWM YIDKGGAEVG PVEKDVIRSL WSKKDIDWTT
1201: KCRALGMSDW KKLRDIRELR WAVAVRVPVL TPSQVGDAAL SILHSMVSAH SDLDDAGEIV TPTPRVKRIL SSTRCLPHIA QALLSGEPVI VEAGAALLKD
1301: VVTRNSKAMI RLYSTGAFYF ALAYPGSNLY SIAQLFSVTH VHQAFHGGEE ATVSSSLPLA KRSVLGGLLP ESLLYVLERS GPAAFAAGMV SDSDTPEIIW
1401: THKMRAENLI CQVLQHLGDY PQKLSQHCHS LYDYAPMPPV TYPELRDEMW CHRYYLRNLC DEIQFPNWPI VEHVEFLQSL LVMWREELTR KPMDLSEGEA
1501: CKILEISLNN VSSDDLNRTA SVELNEEISN ISKQIQNLDE EKLKRQYRKL AMRYHPDKNP EGREKFLAVQ KAYECLQATM QGLQGPQPWR LLLLLKAQCI
1601: LYRRYGHVLR PFKYAGYPML LDAVTVDKDD NNFLSNDRSP LLVAASELVS LTCAASSLNG EELVRDGGVQ LLSTLLSRCM CVVQPTTSQH EPAAIIVTNV
1701: MRTLSVISQF ESARAGFLEL PSLIEDIVHC TELERVPAAV DAALQSIAKV SVFPELQHGL LKAGALWYIL PLLLQYDSTA EESNSVESHG VGVSIQIAKN
1801: EHALQASQAL SRLTGLCADE SLTPYNATAA DVLKALLTPK LASLLKDEVA KDLLSKLNTN LETPEIIWNS ATRSELLNFV DEQRACQCPD GSYDLKNAQS
1901: FSYDALSKEV FVGNVYLKVY NDQPDSEISE PESFCNALID FISSLVHTEL PSVSEDQNLI EDRNSSNDTP ELQSSVAEPS LIEEHSDHQP SSEGMKNEEC
2001: FLIDHLQLGL TALQNLLTKY PDLASVFSSK ERLLPLFECF SVAIASKTDI PKLCLNVLSR LTAYAPCLET MVSDGSSLLL LLQMLHSAPS FREGALHVLY
2101: ALASTPELAW AAAKHGGVVY ILELLLPLQK EIPLQQRAAA ASLLGKLVAQ PMHGPRVAIT LVRFLPDGLV SIIRDGPGEA VVHALERTTE TPELVWTPAM
2201: AASLSAQIAT MASDIYREQQ KGSVIEWDVP EQSAGQQEMR DEPQVGGIYV RRFLKDPKFP LRNPKRFLEG LLDQYLSAMA ATHYEQHPVD PELPLLLSAA
2301: LVSLLRVHPA LADHIGHLGY VPKLVAAVAY EGRRETMSSG EVKAEEIGSD GVNESTDPSS LPGQTPQERV RLSCLRVLHQ LAASTTCAEA MAATSAGNAQ
2401: VVPLLMKAIG WLGGSILALE TLKRVVVAGN RARDALVAQG LKVGLIEVLL GLLDWRTGGR YGLSSHMKWN ESEASIGRVL AVEVLHGFAT EGAHCSKVRE
2501: ILDASEVWSA YKDQKHDLFL PSNTQSAAGV AGFIENSSNS LTYALTAPPP PSHP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)