suba logo
AT2G26850.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G32560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJP6eggNOG:ENOG410ZFSGEMBL:AC005168EMBL:BT012221EMBL:BT012423EMBL:CP002685EnsemblPlants:AT2G26850
EnsemblPlants:AT2G26850.1entrez:817226GeneID:817226Genevisible:Q6NLB1Gramene:AT2G26850.1hmmpanther:PTHR31482hmmpanther:PTHR31482:SF2
HOGENOM:HOG000030653InParanoid:Q6NLB1InterPro:IPR001810KEGG:ath:AT2G26850OMA:TWERIRAPaxDb:Q6NLB1Pfam:PF00646
Pfam:Q6NLB1Pfscan:PS50181PhylomeDB:Q6NLB1PIR:T02650PRIDE:Q6NLB1PRO:PR:Q6NLB1PROSITE:PS50181
ProteinModelPortal:Q6NLB1Proteomes:UP000006548RefSeq:NP_180253.2SMART:SM00256SMR:Q6NLB1SUPFAM:SSF81383TAIR:AT2G26850
UniGene:At.50102UniProt:Q6NLB1
Coordinates (TAIR10) chr2:-:11449369..11450889
Molecular Weight (calculated) 43408.80 Da
IEP (calculated) 7.76
GRAVY (calculated) -0.46
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLYLLITCL SFFFFSKSLS FPQWASKTKN LLSFYFSKYL FTNSLHQITP DLASPVLGKM SILDLPDLPL DCILELLPPS ELCTMARVCS SLRERCVSDH
101: LWEKHLKTKW GKILGPSAHK EWQCYLSSPY HLDSPHHKTS HLGLAKIISL MRSLSSIFRD DDHRRRYPSS IPLDSTMNFY LSLETGRFWF PAQVYNRENG
201: HVGFMLSCYD AELSYDTDTN TFQARYPPHG KRAIAVEKDV TWERIRAAPV DASPHNLYVS DSLNELKPGD HIEIQWRRNK EFPYGWWYSV VGHMESCDGN
301: LNHCQCHNSE MMVLEFNQYT VGSRWRKTMI NRRDHREKGN EEDGFYGGIR KINCKEDIEM WKRLWPSSIL E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)