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AT2G26730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 14506206
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G58300.2); Has 147963 Blast hits to 108487 proteins in 3857 species: Archae - 104; Bacteria - 12149; Metazoa - 40706; Fungi - 7620; Plants - 70847; Viruses - 383; Other Eukaryotes - 16154 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEGPeggNOG:ENOG4111F0SEMBL:FJ708702EnsemblPlants:AT2G26730EnsemblPlants:AT2G26730.1entrez:817214ExpressionAtlas:C0LGL2
Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:817214GO:GO:0004672GO:GO:0005524GO:GO:0016021Gramene:AT2G26730.1
hmmpanther:PTHR27008hmmpanther:PTHR27008:SF24InterPro:IPR000719InterPro:IPR001611InterPro:IPR011009InterPro:IPR013210InterPro:IPR013320
InterPro:IPR032675iPTMnet:C0LGL2KEGG:ath:AT2G26730OMA:FDAHMDAPaxDb:C0LGL2Pfam:O48788Pfam:PF00069
Pfam:PF08263Pfam:PF13855Pfscan:PS50011PhylomeDB:C0LGL2PRIDE:C0LGL2PRIDE:O48788PRO:PR:O48788
PROSITE:PS50011ProteinModelPortal:C0LGL2RefSeq:NP_180241.1SMR:C0LGL2STRING:3702.AT2G26730.1SUPFAM:SSF52058SUPFAM:SSF56112
TAIR:AT2G26730TMHMM:TMhelixUniGene:At.24004UniProt:C0LGL2UniProt:O48788
Coordinates (TAIR10) chr2:+:11388621..11391286
Molecular Weight (calculated) 71755.60 Da
IEP (calculated) 7.61
GRAVY (calculated) -0.19
Length 658 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISWVLNS LFSILLLTQR VNSESTAEKQ ALLTFLQQIP HENRLQWNES DSACNWVGVE CNSNQSSIHS LRLPGTGLVG QIPSGSLGRL TELRVLSLRS
101: NRLSGQIPSD FSNLTHLRSL YLQHNEFSGE FPTSFTQLNN LIRLDISSNN FTGSIPFSVN NLTHLTGLFL GNNGFSGNLP SISLGLVDFN VSNNNLNGSI
201: PSSLSRFSAE SFTGNVDLCG GPLKPCKSFF VSPSPSPSLI NPSNRLSSKK SKLSKAAIVA IIVASALVAL LLLALLLFLC LRKRRGSNEA RTKQPKPAGV
301: ATRNVDLPPG ASSSKEEVTG TSSGMGGETE RNKLVFTEGG VYSFDLEDLL RASAEVLGKG SVGTSYKAVL EEGTTVVVKR LKDVMASKKE FETQMEVVGK
401: IKHPNVIPLR AYYYSKDEKL LVFDFMPTGS LSALLHGSRG SGRTPLDWDN RMRIAITAAR GLAHLHVSAK LVHGNIKASN ILLHPNQDTC VSDYGLNQLF
501: SNSSPPNRLA GYHAPEVLET RKVTFKSDVY SFGVLLLELL TGKSPNQASL GEEGIDLPRW VLSVVREEWT AEVFDVELMR YHNIEEEMVQ LLQIAMACVS
601: TVPDQRPVMQ EVLRMIEDVN RSETTDDGLR QSSDDPSKGS EGQTPPGESR TPPRSVTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)