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AT2G26580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plant-specific transcription factor YABBY family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ2SeggNOG:ENOG41115SREMBL:AC002505EMBL:AK119091
EMBL:BT003734EMBL:CP002685EnsemblPlants:AT2G26580EnsemblPlants:AT2G26580.1
EnsemblPlants:AT2G26580.2entrez:817199Gene3D:1.10.30.10GeneID:817199
Genevisible:Q8GW46GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0009944GO:GO:0046872GO:GO:1902183
GO:GO:2000024Gramene:AT2G26580.1Gramene:AT2G26580.2hmmpanther:PTHR31675
hmmpanther:PTHR31675:SF6HOGENOM:HOG000239859InParanoid:Q8GW46InterPro:IPR006780
InterPro:IPR009071KEGG:ath:AT2G26580OMA:MATEQLCPANTHER:PTHR31675
PaxDb:Q8GW46Pfam:PF04690Pfam:Q8GW46PhylomeDB:Q8GW46
PIR:T00991PRO:PR:Q8GW46ProteinModelPortal:Q8GW46Proteomes:UP000006548
RefSeq:NP_850080.1RefSeq:NP_850081.1STRING:3702.AT2G26580.1SUPFAM:SSF47095
TAIR:AT2G26580tair10-symbols:YAB5UniGene:At.38874UniProt:Q8GW46
Coordinates (TAIR10) chr2:-:11303923..11306739
Molecular Weight (calculated) 18506.20 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.30
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSVMATEQ LCYIPCNFCN IILAVNVPCS SLFDIVTVRC GHCTNLWSVN MAAALQSLSR PNFQATNYAV PEYGSSSRSH TKIPSRISTR TITEQRIVNR
101: PPEKRQRVPS AYNQFIKEEI QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLESNKQ AKIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)