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AT2G26500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome b6f complex subunit (petM), putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cytochrome b6f complex subunit (petM), putative; FUNCTIONS IN: plastoquinol-plastocyanin reductase activity; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PetM of cytochrome b6/f complex subunit 7 (InterPro:IPR012595); Has 54 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J09JeggNOG:ENOG410Y2Z3EMBL:AC002505EMBL:AF375459EMBL:AY060541EMBL:AY088737EMBL:CP002685
EnsemblPlants:AT2G26500EnsemblPlants:AT2G26500.1EnsemblPlants:AT2G26500.2entrez:817191ExpressionAtlas:O48717GeneID:817191GO:GO:0009512
GO:GO:0009535GO:GO:0016021Gramene:AT2G26500.1Gramene:AT2G26500.2HAMAP:MF_00396hmmpanther:PTHR34951HOGENOM:HOG000240439
InterPro:IPR012595OMA:PAVISWTPfam:PF08041PhylomeDB:O48717PIR:T00983Proteomes:UP000006548RefSeq:NP_565623.1
RefSeq:NP_850079.1SMR:O48717STRING:3702.AT2G26500.1SUPFAM:SSF103441TAIR:AT2G26500TMHMM:TMhelixUniGene:At.22912
UniProt:O48717
Coordinates (TAIR10) chr2:+:11270370..11270747
Molecular Weight (calculated) 12988.80 Da
IEP (calculated) 9.32
GRAVY (calculated) 0.23
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MATAAAPAVI SWTRSGIVSK SGQTQKKSEM KVSYITGLNS YGGLKAQNNK VVSMGSPLCT EQCFANVVMS LKGRRGNGGA LSTTCNAVGE IFKIAAIMNA
101: LTLVGVAVGF VLLRIETSVE EAEAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)