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AT2G26430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : arginine-rich cyclin 1
Curator
Summary (TAIR10)
Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.
Computational
Description (TAIR10)
arginine-rich cyclin 1 (RCY1); CONTAINS InterPro DOMAIN/s: Cyclin L (InterPro:IPR017060), Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 14137 Blast hits to 8002 proteins in 370 species: Archae - 18; Bacteria - 504; Metazoa - 7867; Fungi - 2024; Plants - 1419; Viruses - 16; Other Eukaryotes - 2289 (source: NCBI BLink).
Protein Annotations
BioGrid:2535eggNOG:COG5333eggNOG:KOG0835EMBL:AC002505
EMBL:AF249734EMBL:AK226505EMBL:AK317155EMBL:AY086218
EMBL:AY091085EMBL:AY150419EMBL:CP002685EnsemblPlants:AT2G26430
EnsemblPlants:AT2G26430.1EnsemblPlants:AT2G26430.2EnsemblPlants:AT2G26430.3entrez:817183
ExpressionAtlas:Q8RWV3Gene3D:1.10.472.10GeneID:817183Genevisible:Q8RWV3
GO:GO:0000307GO:GO:0005634GO:GO:0006355GO:GO:0009506
GO:GO:0009651GO:GO:0016538GO:GO:0045737GO:GO:0045944
GO:GO:0051301GO:GO:0051321GO:GO:1901409hmmpanther:PTHR10026
hmmpanther:PTHR10026:SF13HOGENOM:HOG000005997InParanoid:Q8RWV3IntAct:Q8RWV3
InterPro:IPR006671InterPro:IPR013763InterPro:IPR015429KEGG:ath:AT2G26430
OMA:PREVYNVPaxDb:Q8RWV3Pfam:PF00134Pfam:Q8RWV3
PhylomeDB:Q8RWV3PIR:T00976PIRSF:PIRSF036580PRIDE:Q8RWV3
PRO:PR:Q8RWV3ProteinModelPortal:Q8RWV3Proteomes:UP000006548RefSeq:NP_001077962.1
RefSeq:NP_001077963.1RefSeq:NP_565622.1SMART:SM00385SMR:Q8RWV3
STRING:3702.AT2G26430.1SUPFAM:SSF47954TAIR:AT2G26430tair10-symbols:ATRCY1
tair10-symbols:RCY1UniGene:At.19077UniProt:Q8RWV3
Coordinates (TAIR10) chr2:-:11243433..11245504
Molecular Weight (calculated) 47558.00 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.88
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MIYTAIDNFY LSDEQLKASP SRKDGIDETT EISLRIYGCD LIQEGGILLK LPQAVMATGQ VLFQRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLEHL DMYAKKFSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSSID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSGNSQGQS ATKDLLPGAG EAVDTKCTAG SANNDLKDGM
301: VTTPHEKATD SKKSGTESNS QPIVGDSSYE RSKVGDRERE SDREKERGRE RDRGRSHRGR DSDRDSDRER DKLKDRSHHR SRDRLKDSGG HSDKSRHHSS
401: RDRDYRDSSK DRRRHH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)