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AT2G26410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28115582 (2017): nucleus nuclear matrix nucleolus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ-domain 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 4 (Iqd4); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 2 (TAIR:AT5G03040.3); Has 2355 Blast hits to 2176 proteins in 294 species: Archae - 6; Bacteria - 370; Metazoa - 426; Fungi - 119; Plants - 1088; Viruses - 37; Other Eukaryotes - 309 (source: NCBI BLink).
Protein Annotations
EMBL:CP002685EnsemblPlants:AT2G26410EnsemblPlants:AT2G26410.1entrez:817181GeneID:817181Gramene:AT2G26410.1hmmpanther:PTHR32295
InterPro:IPR000048iPTMnet:F4IUJ7KEGG:ath:AT2G26410ncoils:CoilOMA:PWDAESIPaxDb:F4IUJ7Pfscan:PS50096
PRIDE:F4IUJ7PROSITE:PS50096ProteinModelPortal:F4IUJ7Proteomes:UP000006548RefSeq:NP_180209.4TAIR:AT2G26410tair10-symbols:Iqd4
UniGene:At.52924UniProt:F4IUJ7
Coordinates (TAIR10) chr2:-:11234651..11236719
Molecular Weight (calculated) 58280.90 Da
IEP (calculated) 11.03
GRAVY (calculated) -0.96
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKNWLTCVS VACLSPGKDK KNQKPEKPKR KWSFGKQKSR ESFDFPLEET PPVDPSPSSV HRPYPPPPPL PDFAPQPLLP PPSPPPPPPA YTINTRIYGE
101: SKESKNRQAL ALASAVAAEA AVVAAHAAAE VIRLTTPSTP QIEESKEETA AIKIQNAYRC YTARRTLRAL RGMARLKSLL QGKYVKRQMN AMLSSMQTLT
201: RLQTQIQERR NRLSAENKTR HRLIQQKGHQ KENHQNLVTA GNFDSSNKSK EQIVARSVNR KEASVRRERA LAYAYSHQQT WRNSSKLPHQ TLMDTNTTDW
301: GWSWLERWMA SRPWDAESID DQVSVKSSLK RENSIKSSPA RSKTQKSASQ SSIQWPVNND TKSRKIEVTN RRHSIGGGSS ENAKDDESVG SSSSRRNSLD
401: NTQTVKSKVS VETTSNVSNA QTVKPKANVG AKRNLDNTKT LKSKSSVGTT GNLANTEAVK SKVNVGTTSM PKKEVVADKK KPPQMVLPKK RLSSSTSLGK
501: TKKLSDSDKA TTGVANGEKK RRNGGSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)