AT2G26410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : IQ-domain 4 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
IQ-domain 4 (Iqd4); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 2 (TAIR:AT5G03040.3); Has 2355 Blast hits to 2176 proteins in 294 species: Archae - 6; Bacteria - 370; Metazoa - 426; Fungi - 119; Plants - 1088; Viruses - 37; Other Eukaryotes - 309 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11234651..11236719 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 58280.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 11.03 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKNWLTCVS VACLSPGKDK KNQKPEKPKR KWSFGKQKSR ESFDFPLEET PPVDPSPSSV HRPYPPPPPL PDFAPQPLLP PPSPPPPPPA YTINTRIYGE 101: SKESKNRQAL ALASAVAAEA AVVAAHAAAE VIRLTTPSTP QIEESKEETA AIKIQNAYRC YTARRTLRAL RGMARLKSLL QGKYVKRQMN AMLSSMQTLT 201: RLQTQIQERR NRLSAENKTR HRLIQQKGHQ KENHQNLVTA GNFDSSNKSK EQIVARSVNR KEASVRRERA LAYAYSHQQT WRNSSKLPHQ TLMDTNTTDW 301: GWSWLERWMA SRPWDAESID DQVSVKSSLK RENSIKSSPA RSKTQKSASQ SSIQWPVNND TKSRKIEVTN RRHSIGGGSS ENAKDDESVG SSSSRRNSLD 401: NTQTVKSKVS VETTSNVSNA QTVKPKANVG AKRNLDNTKT LKSKSSVGTT GNLANTEAVK SKVNVGTTSM PKKEVVADKK KPPQMVLPKK RLSSSTSLGK 501: TKKLSDSDKA TTGVANGEKK RRNGGSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)