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AT2G26250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 10
Curator
Summary (TAIR10)
epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle.
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 10 (KCS10); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: in 8 processes; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 4 (TAIR:AT1G19440.1); Has 1723 Blast hits to 1687 proteins in 351 species: Archae - 0; Bacteria - 632; Metazoa - 0; Fungi - 0; Plants - 985; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G26250-MONOMERBioGrid:2517EC:2.3.1.199eggNOG:ENOG410II45eggNOG:ENOG410YCWNEMBL:AC004484EMBL:AF214489
EMBL:AF214490EMBL:AF214491EMBL:AF214492EMBL:AF214493EMBL:AF214494EMBL:AF214495EMBL:AF214496
EMBL:AF214497EMBL:AF214498EMBL:AF214499EMBL:AF214500EMBL:AF214501EMBL:AF214502EMBL:AF214503
EMBL:AF214504EMBL:AF214505EMBL:AF214506EMBL:AF337910EMBL:AJ010713EMBL:AK220796EMBL:AY039563
EMBL:AY149961EMBL:BT002360EMBL:CP002685EnsemblPlants:AT2G26250EnsemblPlants:AT2G26250.1entrez:817165Gene3D:3.40.47.10
GeneID:817165Genevisible:Q570B4GO:GO:0005783GO:GO:0005789GO:GO:0006633GO:GO:0009409GO:GO:0009416
GO:GO:0016020GO:GO:0016021GO:GO:0016747GO:GO:0080167Gramene:AT2G26250.1hmmpanther:PTHR31561hmmpanther:PTHR31561:SF2
InParanoid:Q570B4InterPro:IPR012392InterPro:IPR013601InterPro:IPR013747InterPro:IPR016039iPTMnet:Q570B4KEGG:00061+2.3.1.180
KEGG:00062+2.3.1.199KEGG:ath:AT2G26250KO:K15397ncoils:CoilOMA:EDEQGFKPANTHER:PTHR31561PaxDb:Q570B4
Pfam:PF08392Pfam:PF08541Pfam:Q570B4PhylomeDB:Q570B4PIR:B84658PIRSF:PIRSF036417PRIDE:Q570B4
PRO:PR:Q570B4ProteinModelPortal:Q570B4Proteomes:UP000006548RefSeq:NP_180193.1SMR:Q570B4STRING:3702.AT2G26250.1SUPFAM:SSF53901
TAIR:AT2G26250tair10-symbols:FDHtair10-symbols:KCS10TMHMM:TMhelixUniGene:At.47566UniGene:At.68106UniGene:At.74865
UniPathway:UPA00094UniProt:Q570B4
Coordinates (TAIR10) chr2:-:11170799..11173059
Molecular Weight (calculated) 61964.60 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.20
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)