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AT2G26160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.948
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein with a domain of unknown function (DUF295)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein with a domain of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT3G25750.1); Has 338 Blast hits to 337 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JQTPeggNOG:ENOG411184JEMBL:AC004747EMBL:CP002685EMBL:DQ446568EnsemblPlants:AT2G26160EnsemblPlants:AT2G26160.1
entrez:817156GeneID:817156Genevisible:Q1PEZ8Gramene:AT2G26160.1hmmpanther:PTHR33110HOGENOM:HOG000064666InParanoid:Q1PEZ8
InterPro:IPR005174KEGG:ath:AT2G26160OMA:RRICDADPaxDb:Q1PEZ8Pfam:PF03478Pfam:Q1PEZ8PhylomeDB:Q1PEZ8
PIR:T02608PRIDE:Q1PEZ8PRO:PR:Q1PEZ8ProteinModelPortal:Q1PEZ8Proteomes:UP000006548RefSeq:NP_180185.2TAIR:AT2G26160
UniGene:At.52922UniProt:Q1PEZ8
Coordinates (TAIR10) chr2:-:11138456..11139451
Molecular Weight (calculated) 37954.00 Da
IEP (calculated) 8.92
GRAVY (calculated) -0.11
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKPEWSELP GDLINLTANR FSSISDVLRV RSICKPWRSA AATPKSFQCN LPSSNKMIET VLSPTTFFRV TGPSSCSYKG WLIRTKQVSE SSKINLLSPF
101: FRQLLTPSQQ TLDLLKFEVS EIRQSYEIHI FDKYLIQGVI GKEGPSHILS RVVFLDNLIF AVGQDDKIWC CKSGEESSRI WTKIKNQVED FLDIILHKGQ
201: VYALDLTGAI WWISLSPLSL LQFTPSIPMD YDGYDSCNKR LVEYCGDLCI IHQLRLKKAY IRRSQRTVGF KVYKMDEYVA KWVEVRSLGD KALIVARDSC
301: FTVVASEYHG CLNNSIYFVD NVRKSVIRMK L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)