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AT2G26060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.978
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1345 (emb1345); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G32990.1); Has 69948 Blast hits to 29854 proteins in 810 species: Archae - 58; Bacteria - 8000; Metazoa - 27493; Fungi - 15911; Plants - 9301; Viruses - 0; Other Eukaryotes - 9185 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRMAeggNOG:KOG0645EMBL:AC004747EMBL:AY085277EMBL:AY093154EMBL:BT003394EMBL:CP002685
EnsemblPlants:AT2G26060EnsemblPlants:AT2G26060.1EnsemblPlants:AT2G26060.2entrez:817147ExpressionAtlas:O80990Gene3D:2.130.10.10GeneID:817147
Genevisible:O80990GO:GO:0005634GO:GO:0016226GO:GO:0097361HAMAP:MF_03037hmmpanther:PTHR19920hmmpanther:PTHR19920:SF0
HOGENOM:HOG000208901InParanoid:O80990InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472
InterPro:IPR028608KEGG:ath:AT2G26060OMA:WEVAGDDPaxDb:O80990Pfam:PF00400Pfscan:PS50082Pfscan:PS50294
PhylomeDB:O80990PIR:T02617PRIDE:O80990PRINTS:PR00320PRO:PR:O80990PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:O80990Proteomes:UP000006548RefSeq:NP_001031421.1RefSeq:NP_565615.1scanprosite:PS00678SMART:SM00320
SMR:O80990STRING:3702.AT2G26060.1SUPFAM:SSF50978TAIR:AT2G26060tair10-symbols:emb1345UniGene:At.38940UniProt:O80990
Coordinates (TAIR10) chr2:+:11102400..11105127
Molecular Weight (calculated) 39133.20 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.41
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)