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AT2G25980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.971
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Mannose-binding lectin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G33790.1); Has 1842 Blast hits to 680 proteins in 37 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 1834; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:2491EMBL:AC004747EMBL:AY078966EMBL:AY133579EMBL:CP002685EnsemblPlants:AT2G25980EnsemblPlants:AT2G25980.1
entrez:817139Gene3D:2.100.10.30GeneID:817139Genevisible:O80998GO:GO:0009506GO:GO:0030246Gramene:AT2G25980.1
hmmpanther:PTHR23244hmmpanther:PTHR23244:SF208HOGENOM:HOG000015149InParanoid:O80998IntAct:O80998InterPro:IPR001229KEGG:ath:AT2G25980
OMA:GADHENVPaxDb:O80998Pfam:O80998Pfam:PF01419Pfscan:PS51752PhylomeDB:O80998PIR:T02625
PRIDE:O80998PRO:PR:O80998PROSITE:PS51752ProteinModelPortal:O80998Proteomes:UP000006548RefSeq:NP_180168.1SMART:SM00915
SMR:O80998STRING:3702.AT2G25980.1SUPFAM:SSF51101TAIR:AT2G25980UniGene:At.38955UniProt:O80998
Coordinates (TAIR10) chr2:-:11077718..11079642
Molecular Weight (calculated) 48981.50 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.49
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQRLEAKGG KGGNQWDDGA DHENVTKIHV RGGLEGIQFI KFEYVKAGQT VVGPIHGVSG KGFTQTFEIN HLNGEHVVSV KGCYDNISGV IQALQFETNQ
101: RSSEVMGYDD TGTKFTLEIS GNKITGFHGS ADANLKSLGA YFTPPPPIKQ EYQGGTGGSP WDHGIYTGIR KVYVTFSPVS ISHIKVDYDK DGKVETRQDG
201: DMLGENRVQG QPNEFVVDYP YEYITSIEVT CDKVSGNTNR VRSLSFKTSK DRTSPTYGRK SERTFVFESK GRALVGLHGR CCWAIDALGA HFGAPPIPPP
301: PPTEKLQGSG GDGGESWDDG AFDGVRKIYV GQGENGIASV KFVYDKNNQL VLGEEHGKHT LLGYEEFELD YPSEYITAVE GYYDKVFGSE SSVIVMLKFK
401: TNKRTSPPYG MDAGVSFILG KEGHKVVGFH GKASPELYQI GVTVAPITK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)