AT2G25970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : KH domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT1G33680.1); Has 68611 Blast hits to 35814 proteins in 1587 species: Archae - 63; Bacteria - 12513; Metazoa - 31065; Fungi - 9811; Plants - 6751; Viruses - 351; Other Eukaryotes - 8057 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11071844..11075604 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64610.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.12 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||||||||||||||||||
| Length | 632 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADESQYSSD TYSNKRKYEE PTAPPPSTRR PTGFSSGPIP SASVDPTAPT GLPPSSYNSV PPPMDEIQIA KQKAQEIAAR LLNSADAKRP RVDNGASYDY 101: GDNKGFSSYP SEGKQMSGTV PSSIPVSYGS FQGTTKKIDI PNMRVGVIIG KGGETIKYLQ LQSGAKIQVT RDMDADPNCA TRTVDLTGTP DQISKAEQLI 201: TDVLQEAEAG NTAGSGGGGG RRMGGQAGAD QFVMKIPNNK VGLIIGKGGE TIKSMQAKTG ARIQVIPLHL PPGDPTPERT LQIDGITEQI EHAKQLVNEI 301: ISGENRMRNS AMGGGYPQQG GYQARPPSSW APPGGPPAQP GYGGYMQPGA YPGPPQYGQS PYGSYPQQTS AGYYDQSSVP PSQQSAQGEY DYYGQQQSQQ 401: PSSGGSSAPP TDTTGYNYYQ HASGYGQAGQ GYQQDGYGAY NASQQSGYGQ AAGYDQQGGY GSTTNPSQEE DASQAAPPSS AQSGQAGYGT TGQQPPAQGS 501: TGQAGYGAPP TSQAGYSSQP AAAYNSGYGA PPPASKPPTY GQSQQSPGAP GSYGSQSGYA QPAASGYGQP PAYGYGQAPQ GYGSYGGYTQ PAAGGGYSSD 601: GSAGATAGGG GGTPASQSAA PPAGPPKASP KS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)