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AT2G25940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha-vacuolar processing enzyme
Curator
Summary (TAIR10)
Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.
Computational
Description (TAIR10)
alpha-vacuolar processing enzyme (ALPHA-VPE); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, vacuolar protein processing; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: gamma vacuolar processing enzyme (TAIR:AT4G32940.1); Has 793 Blast hits to 791 proteins in 239 species: Archae - 4; Bacteria - 12; Metazoa - 278; Fungi - 115; Plants - 259; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G25940-MONOMEREC:3.4.22.34eggNOG:COG5206eggNOG:KOG1348EMBL:AC004747EMBL:AC005395EMBL:AY058055
EMBL:AY090296EMBL:CP002685EMBL:D61393EnsemblPlants:AT2G25940EnsemblPlants:AT2G25940.1entrez:817135GeneID:817135
Genevisible:P49047GO:GO:0000326GO:GO:0004197GO:GO:0006624GO:GO:0051603Gramene:AT2G25940.1hmmpanther:PTHR12000
hmmpanther:PTHR12000:SF15HOGENOM:HOG000236335InParanoid:P49047InterPro:IPR001096KEGG:ath:AT2G25940KO:K01369MEROPS:C13.002
OMA:PSEYETCPANTHER:PTHR12000PaxDb:P49047Pfam:P49047Pfam:PF01650PhylomeDB:P49047PIR:T02629
PIRSF:PIRSF019663PRIDE:P49047PRINTS:PR00776PRO:PR:P49047ProteinModelPortal:P49047Proteomes:UP000006548RefSeq:NP_180165.1
SMR:P49047STRING:3702.AT2G25940.1TAIR:AT2G25940tair10-symbols:ALPHA-VPEtair10-symbols:ALPHAVPETMHMM:TMhelixUniGene:At.44999
UniGene:At.48519UniProt:P49047
Coordinates (TAIR10) chr2:-:11063496..11066020
Molecular Weight (calculated) 52673.20 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.31
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTVVSFLAL FLFLVAAVSG DVIKLPSLAS KFFRPTENDD DSTKWAVLVA GSSGYWNYRH QADVCHAYQL LKKGGVKEEN IVVFMYDDIA KNEENPRPGV
101: IINSPNGEDV YNGVPKDYTG DEVNVDNLLA VILGNKTALK GGSGKVVDSG PNDHIFIYYS DHGGPGVLGM PTSPNLYAND LNDVLKKKYA SGTYKSLVFY
201: LEACESGSIF EGLLPEGLNI YATTASNAEE SSWGTYCPGE DPSPPSEYET CLGDLYSVAW IEDSEKHNLQ TETLHEQYEL VKKRTAGSGK SYGSHVMEFG
301: DIGLSKEKLV LFMGTNPADE NFTFVNENSI RPPSRVTNQR DADLVHFWHK YQKAPEGSAR KVEAQKQVLE AMSHRLHVDN SILLIGILLF GLEGHAVLNK
401: VRPSGEPLVD DWDCLKSLVR AFERHCGSLS QYGIKHMRSI ANMCNAGIQM RQMEEAAMQA CPTIPTSPWS SLDRGFSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)