AT2G25930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a novel nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway. Required component of the core circadian clock regardless of light conditions. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EARLY FLOWERING 3 (ELF3); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21320.1); Has 3878 Blast hits to 3344 proteins in 292 species: Archae - 0; Bacteria - 125; Metazoa - 1474; Fungi - 865; Plants - 343; Viruses - 16; Other Eukaryotes - 1055 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:11059459..11063178 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77210.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 695 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS 101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG 201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD 301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP 401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY 501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS 601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)