AT2G25920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (TAIR:AT2G25910.2); Has 131 Blast hits to 125 proteins in 54 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi - 12; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11054425..11055916 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 30666.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.67 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSSSPTQRT HVSIPPEPGG KSLTQEANEP PVPISVSSPC GKRTRDPEDE VYLDNLRSQK RYLSEIMACS LNGLTVGDSL PVNMLESPAR SESFLYHRDD 101: LSLQYSPMSE DSDEARFCED PTATASTSSS QPESRPTSPV SPYRYQRPLT STNSPQPSPT ILHHSHTCPA SMISNAATTT TPQSRQRGSD TEGRFPSSPS 201: DICHSGDLRR TALLRSVQMR TQPCGYSSSS GPSNIDGEER MCSKSMEEDR GYNKGEDIPY AEVSSKSKSC KALDMRLCEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)