AT2G25910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.958 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein; FUNCTIONS IN: 3'-5' exonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25920.1); Has 1067 Blast hits to 1067 proteins in 347 species: Archae - 0; Bacteria - 413; Metazoa - 196; Fungi - 59; Plants - 125; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11049379..11051997 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38389.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.49 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 341 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSPTQLA HVPIPPEPGG RSPTQEANEP PVPIYIVTDP FQLPADFLNP SPEKKLVIGF DCEGVDLCRH GKLCIMQIAF SNAIYLVDVI EGGEVIMKAC 101: KPALESNYIT KVIHDCKRDS EALYFQFGIR LHNVVDTQIA YSLIEEQEGR RRPLDDYISF VSLLADPRYC GISYEEKEEV RVLMRQDPKF WTYRPMTELM 201: IRAAADDVRF LLYLYHKMMG KLNQRSLWHL AVRGALYCRC LCCMNDADFA DWPTVPPIPD NLKSEDQCLE EEILSVLDVP PGKMGRVIGR KGASILAIKE 301: ACNAEILIGG AKGPPDKIFV IGPVREVRKA EAILRGRMID Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)