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AT2G25870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : haloacid dehalogenase-like hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0561eggNOG:ENOG410IJAQEMBL:AK118762EMBL:AY099804EMBL:BT030369EMBL:CP002685EnsemblPlants:AT2G25870
EnsemblPlants:AT2G25870.1entrez:817128Gene3D:3.40.390.30Gene3D:3.40.50.1000GeneID:817128GO:GO:0004222GO:GO:0004521
GO:GO:0009507GO:GO:0009658GO:GO:0016311GO:GO:0016791GO:GO:0044283GO:GO:0090502GO:GO:1901259
Gramene:AT2G25870.1HAMAP:MF_00009hmmpanther:PTHR10000hmmpanther:PTHR10000:SF8HOGENOM:HOG000238920InterPro:IPR000150InterPro:IPR002036
InterPro:IPR006379InterPro:IPR020549InterPro:IPR023091InterPro:IPR023214KEGG:ath:AT2G25870OMA:LDQEVCRPfam:PF02130
Pfam:PF08282PhylomeDB:Q8L5Z4PROSITE:PS01228PROSITE:PS01306Proteomes:UP000006548RefSeq:NP_850072.1scanprosite:PS01228
scanprosite:PS01229scanprosite:PS01306SMR:Q8L5Z4STRING:3702.AT2G25870.1SUPFAM:SSF55486SUPFAM:SSF56784TAIR:AT2G25870
TIGRfam:TIGR00043TIGRfam:TIGR00099TIGRfam:TIGR01484TIGRFAMs:TIGR00043TIGRFAMs:TIGR00099TIGRFAMs:TIGR01484UniGene:At.38966
UniProt:Q8L5Z4
Coordinates (TAIR10) chr2:+:11031159..11034302
Molecular Weight (calculated) 65309.50 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.27
Length 584 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSRVCPTLR YNRIWSAHAR EMPRATLLLL QPNFFHSSPK TALVNRLDVT SSEFSSMFRR SFHALRSTVG DWRKLPKPPG QVFAERREYR KIRRRAPKKK
101: QELELSVSIC IEEQLPDDLE IQNIAEMLRL NVPMAMTLAF NGLKDSKYKT RETDIEDLGG YETVELSVML CNDDFICKLN KEWRGEDHAT DVLSMSQHVP
201: ELKLPVLMMG DLVISVETAA RQAAERGHTL LDEIRILVIH GLLHLLGFDH EISDEAEQEM EEEEELLLKN LGWKGKGLIQ SAYDIQKTTT VQPEKSDDRK
301: EGDGLRLYKP KFSYIFCDMD GTLLNSKSQI SEANAKALKE ALLRGLKVVI ATGKSRPGAI RILKTADLTG SDGIISESSP GVFVQGLLVY GRQGKEVYRG
401: NLDRDVCRET CLYSLEHRIP LIAFSQDRCL TLFDHPLVDS LHTIYNEPKA EIISSVDQLI AEADIQKVIF MDTTEGVSSV IRPYWSEATG DRANVVQAQS
501: DMLEIVPPGT SKGNGVKMLL NHLGVSPDEI MAIGDGENDI EMLQLASLGV ALSNGAEKTK AVADVIGVSN DQDGVADAIY RYAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)