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AT2G25830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : YebC-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
YebC-related; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF28 (InterPro:IPR002876), Integrase, N-terminal zinc-binding domain-like (InterPro:IPR017856); Has 8692 Blast hits to 8692 proteins in 2830 species: Archae - 0; Bacteria - 6166; Metazoa - 76; Fungi - 120; Plants - 47; Viruses - 0; Other Eukaryotes - 2283 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0217eggNOG:KOG2972EMBL:AC005395EMBL:AY056230
EMBL:AY114086EMBL:CP002685EnsemblPlants:AT2G25830EnsemblPlants:AT2G25830.1
entrez:817125Gene3D:1.10.10.200Gene3D:3.30.1270.10Gene3D:3.30.70.980
GeneID:817125Genevisible:O82314GO:GO:0009507Gramene:AT2G25830.1
HAMAP:MF_00693hmmpanther:PTHR12532hmmpanther:PTHR12532:SF0HOGENOM:HOG000228370
InParanoid:O82314InterPro:IPR002876InterPro:IPR017856InterPro:IPR026563
InterPro:IPR026564InterPro:IPR029072KEGG:ath:AT2G25830OMA:YNTTFER
PANTHER:PTHR12532PaxDb:O82314Pfam:O82314Pfam:PF01709
PhylomeDB:O82314PIR:C84653PRIDE:O82314PRO:PR:O82314
ProteinModelPortal:O82314Proteomes:UP000006548RefSeq:NP_565610.1SMR:O82314
STRING:3702.AT2G25830.1SUPFAM:SSF75625TAIR:AT2G25830UniGene:At.26356
UniProt:O82314
Coordinates (TAIR10) chr2:-:11019091..11021665
Molecular Weight (calculated) 36816.00 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.40
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MASHCSMRVI LLRFSNGVSS RSILNSTNHR LLSLTMTNTL SSLSSISPHT TTSHFTAASQ QSDDQNCFRK LQLRKISIST PLCMGRRSSK IAGRKGAQDS
101: KKAKLYCRIG KEVVSAVKKG GPNPVSNTTL ATILDKAKEL DVPKDIVERN IKRASEKGQE AFIEKIYEVY GYGGVSMVVE VLTDKINRSV AAIRSVVKDY
201: GGKMADSGSV MFKFKRVRVV NIKVTEADKD QLLIIALDAG AEDVIEPPTY EDDTDEDREE RYYKIVTSNE NYSTILSKLR DEGVNFEPDN GSELLPLTTV
301: EVDDEAMELN KELMQKLLEL DDVDAVYIDQ K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)