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AT2G25730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.846
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:20061580 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 157 Blast hits to 144 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRV7eggNOG:KOG1811EMBL:AC006053EMBL:CP002685EnsemblPlants:AT2G25730EnsemblPlants:AT2G25730.1entrez:817114
ExpressionAtlas:Q9SL90GeneID:817114Gramene:AT2G25730.1hmmpanther:PTHR35478hmmpanther:PTHR35478:SF1HOGENOM:HOG000030378IntAct:Q9SL90
PhylomeDB:Q9SL90PIR:A84652Proteomes:UP000006548RefSeq:NP_565607.1STRING:3702.AT2G25730.2TAIR:AT2G25730UniGene:At.26194
UniGene:At.67024UniProt:Q9SL90
Coordinates (TAIR10) chr2:-:10956751..10972729
Molecular Weight (calculated) 274788.00 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.27
Length 2464 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDKETEILSR LAANHLHLAQ FEPLKATLLA LRVRNPDLAL TILQTIVSNA GRFDNVLWSR SCPSPSLLSF LSTIELLRFE NPTSPWGFDS ETLSLRADFL
0101: LMVQVLIDRV TERIKEDEES EDENSGLGNC LRVLQGVLEL GVERLKFVVD TSSSEGSNKI EEDAVVSLRS IVLDYSDVFD ALCCNIQRQL AGCESYGTCL
0201: VEEVQGEEQR KEMNEATCIG SPELDNINVF ALIQRNVQLA QLDAMKTKLD EGDERGAADR IRYLHLDYGV EKENYHAVLK ALLSRVMEKK DEYGDSWHMV
0301: RQNLLFMYKE ALSSNCGDLV QMIQGIQDDM LLPHSQLHLS LDNEQIPLPL ECFRRYLVDL KTERNIEDKS SPMSRAINSC LRDMYHYARI SGSHVLECVM
0401: CAALSSVKKE KLQEANDVLT LFPRLRPLVA SMGWDLLPGK TATRRKLMRL LWTSDSQALR LEESSLYGNQ TDELELASFA ACVNSGKSWT PKASFLMHGN
0501: VSSAHDDAEV DPFVENLVLE RLSAQSPLRV LFDVVPGIKF QDAISLISMQ PIASTAEAWK RIEDIELMHM RYALEAIVLA LGAMEEAMKD ETDASHRVVF
0601: YHLKDLTNHL EAIKNVPRKI MMVNIVISLL HIDDIRLSST QSASSACFSE KSNTPGLDPG DLGTEGEKEI VISFTKQLLD VLRRNLPSHP IEQECQLDGN
0701: YSTDGRQALE WRVSMAKRFI EDCEWRLSVM QHLLPLSERQ WGLKEVLSIL RAAPEKLLNL CMQRAKYDIG EEAVNRFALS AEDKATLELA EWVDNAFKGT
0801: LVEDVMSRTA EGAAAVQDLD FHSLGSQLSP LAMVLLFAQS QVMLSEIYPG GAPKVGFTYW DQVHEVAIIS VLRRILKRLQ EFLEQDDPQI LQASFSGDTI
0901: ISSCTESHRQ GQKDRALAML HQMIEDAHRG KRQFLSGKLH NLARALADEK PEVDVLKGDG SDMAVEKDGV LGLGLKYTKQ SPGSANRAVD GNPVSHETED
1001: KGKKSFGPLS NKTSTYLSQF ILYTAAIGDI VDGTDTTHDF NFFSLVYEWP KDLLTRLVFD RSSTDAAAKV AEVMSADFVH EVISACVPPV YPPRSGHGWA
1101: CIPVIPTTPC SHSEGKVLSP SIEAKPNCYV RSSATPGVPL YPLQLDVIRH LVKISPVRAV LACVFGGSIL YNGSDSIISS SLNDEFPSSP DADRLFYEFS
1201: LDQSERYPTL NRWIQMQTNL HRVSEFVVTP KQKPDDTRIK PDERTGIKRL LEHDSDSESD TEETFSKNNI QPALTDGSAR DGGSFENGVC RTDPTVFLSF
1301: DWENEVPYEK AVNRLIDEGK LMDALALSDR FLRNGASDWL LQLLIKSREE NPSTSGRSQG YGGQSNSWQY CLRLKDKQLA ATLALKCCIG DKLCRSTATY
1401: FRQMIAIIAG KRLSFFLLFE IMFGSWYARC VTLKNLNGKQ VEAECKEDPE GLALRLAGKG AVSAALEVAE SAGLSIDLRR ELQGRQLVKL LTTDPLNGGG
1501: PAEASRFLSS LQDSADALPV VMGAMQLLPD LRSKQLLVHF FLKRRDSNLS DLEVARLNSW ALGLKVLAAL PLPWQQRCSS LHEHPNLIFE ALLMRKQLQY
1601: ASLILKEFPA LRDNNVIMAY AAKAISVTII PPPREPRITV SASRLRQKSR AGPAVKASFT SSLSNFQREA RRAFSWAPRN AENRTTSKDV YRKRKNSGLG
1701: ASERAAWEAM TGIQEDQGSS YSADGQDRLP SVSIAEEWML TGDKTKDEGV RASHKYESTP DIILFKALLS LCSDELVSAR SAMDLCISQM KNVLSSKQLS
1801: EGASVETIGR AYHATEAFVQ GLSYAKSLLR KLLGTTESTN NNGERSRDVD DISSDAGSSS VGSQSTDEPS DVLSLTEIWL GRAELLQSLL GSGISTSLDD
1901: IADQLSSECL RDRLISDERY SMAVYMCKKC KIDVFPVWKA WGLALLRMER YAQARVKFKQ AFQLKGEDIP DVIQEIINTI EGGPPVDVSI VRSMYDHLAK
2001: SAPTILDDSL SADSYLNVLH MPSTFPRSER SRRSLESEKN SSVPGSDFED GPRSNLDTTR YSECTNYLQE HARQNLLGFM FRHGHFKDAC MLFFPQSGLP
2101: PPLQTSSVGA VSTSSSPQRT DPLATEYGTI ESLCEFCVGY GAISSLEEVI TERLESAKNQ DQAINQYIAG ALTRICAFFE INRHFNYLYK FLVLKKDYVT
2201: SGYCCIQLFM NSTTQEDAVR HLEHAKKYWS LTILGVQAHF EEALTARHRG SDSKKLVTKG VRGKSAAEKL SEETLVKLSS RVKMQIDVVK SFSDSEGAPW
2301: KHSLFGNPND SETSRRRCEI VETLVEKNFD LAYSVIYEFK LSAVDIYAGV ATSLADRKKG SQLTELFKNI KGTIQDDDWD QVLGAAINIY ANKHKERPDR
2401: LIDMLTSSHR KVLACVVCGR LKSAFQIASK SGSVADVQYV AHQALHANSH TVLDMCKQWL AKYM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)