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AT2G25720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J44XeggNOG:ENOG410XYX3EMBL:AC006053EMBL:AK229203EMBL:AY086074EMBL:BT024570EMBL:CP002685
EnsemblPlants:AT2G25720EnsemblPlants:AT2G25720.1entrez:817113GeneID:817113Gramene:AT2G25720.1hmmpanther:PTHR13282hmmpanther:PTHR13282:SF7
HOGENOM:HOG000240957InterPro:IPR013865KEGG:ath:AT2G25720OMA:MSDPYERPANTHER:PTHR13282PhylomeDB:Q9SL91PIR:H84651
Proteomes:UP000006548RefSeq:NP_565606.1STRING:3702.AT2G25720.1TAIR:AT2G25720UniGene:At.38986UniProt:Q9SL91
Coordinates (TAIR10) chr2:-:10955664..10956017
Molecular Weight (calculated) 13026.40 Da
IEP (calculated) 10.06
GRAVY (calculated) -1.23
Length 117 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDPYERVNG GRLAFKGGDL ATRKSIEKKK KKKQKKNKEK LDGVEDGAKT APDGSPPPAA AAGDEDIYSI DAAKKKKYDD LFPVEAKKFG YIPKANFESR
101: EDALDDRVKK KADRYCK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)