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AT2G25710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.676
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : holocarboxylase synthase 1
Curator
Summary (TAIR10)
Encodes holocarboxylase synthase.
Computational
Description (TAIR10)
holocarboxylase synthase 1 (HCS1); FUNCTIONS IN: biotin-[acetyl-CoA-carboxylase] ligase activity, catalytic activity; INVOLVED IN: protein modification process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin protein ligase, C-terminal (InterPro:IPR003142), Biotin/lipoate A/B protein ligase (InterPro:IPR004143), Biotin--acetyl-CoA-carboxylase ligase (InterPro:IPR004408); BEST Arabidopsis thaliana protein match is: holocarboxylase synthetase 2 (TAIR:AT1G37150.2); Has 6062 Blast hits to 6058 proteins in 2314 species: Archae - 226; Bacteria - 4056; Metazoa - 119; Fungi - 135; Plants - 62; Viruses - 0; Other Eukaryotes - 1464 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G25710-MONOMERBioCyc:ARA:GQT-1035-MONOMERBioCyc:MetaCyc:AT2G25710-MONOMEREC:6.3.4.-EC:6.3.4.11EC:6.3.4.15eggNOG:COG0340
eggNOG:KOG1536EMBL:AC006053EMBL:AF414937EMBL:BT024748EMBL:CP002685EMBL:U41369EnsemblPlants:AT2G25710
EnsemblPlants:AT2G25710.1EnsemblPlants:AT2G25710.2entrez:817112GeneID:817112Genevisible:Q9SL92GO:GO:0004077GO:GO:0004078
GO:GO:0005524GO:GO:0005829GO:GO:0006464GO:GO:0009507GO:GO:0009536GO:GO:0042966hmmpanther:PTHR12835
HOGENOM:HOG000264536InParanoid:Q9SL92InterPro:IPR003142InterPro:IPR004143InterPro:IPR004408iPTMnet:Q9SL92KEGG:ath:AT2G25710
OMA:TLEELYYPANTHER:PTHR12835PaxDb:Q9SL92Pfam:PF02237Pfam:PF03099Pfam:Q9SL92Pfscan:PS51733
PhylomeDB:Q9SL92PIR:G84651PRIDE:Q9SL92PRO:PR:Q9SL92PROSITE:PS51733ProteinModelPortal:Q9SL92Proteomes:UP000006548
Reactome:R-ATH-196780RefSeq:NP_565605.1RefSeq:NP_850067.1SMR:Q9SL92STRING:3702.AT2G25710.1SUPFAM:SSF55681TAIR:AT2G25710
tair10-symbols:HCS1TIGRfam:TIGR00121TIGRFAMs:TIGR00121UniGene:At.19972UniProt:Q9SL92
Coordinates (TAIR10) chr2:+:10952719..10955061
Molecular Weight (calculated) 41221.70 Da
IEP (calculated) 7.80
GRAVY (calculated) -0.11
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAVRSTTTL SNFHLLNILV LRSLKPLHRL SFSFSASAME SDASCSLVLC GKSSVETEVA KGLKNKNSLK LPDNTKVSLI LESEAKNLVK DDDNSFNLSL
101: FMNSIITHRF GRFLIWSPRL SSTHDVVSHN FSELPVGSVC VTDIQFKGRG RTKNVWESPK GCLMYSFTLE MEDGRVVPLI QYVVSLAVTE AVKDVCDKKG
201: LPYIDVKIKW PNDLYVNGLK VGGILCTSTY RSKKFNVSVG VGLNVDNGQP TTCLNAVLKG MAPESNLLKR EEILGAFFHK FEKFFDLFMD QGFKSLEELY
301: YRTWLHSEQR VIVEDKVEDQ VVQNVVTIQG LTSSGYLLAV GDDNQMYELH PDGNSFDFFK GLVRRKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)