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AT2G25660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 2410
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2410 (emb2410); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF490 (InterPro:IPR007452); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II7YeggNOG:ENOG410YCTQEMBL:CP002685EnsemblPlants:AT2G25660EnsemblPlants:AT2G25660.1entrez:817107GeneID:817107
GO:GO:0016021Gramene:AT2G25660.1hmmpanther:PTHR34457hmmpanther:PTHR34457:SF1InParanoid:F4ISL7InterPro:IPR007452iPTMnet:F4ISL7
KEGG:ath:AT2G25660ncoils:CoilOMA:REMKHANPaxDb:F4ISL7Pfam:PF04357PRIDE:F4ISL7Proteomes:UP000006548
RefSeq:NP_180137.3STRING:3702.AT2G25660.1TAIR:AT2G25660tair10-symbols:emb2410TMHMM:TMhelixUniGene:At.25632UniGene:At.38992
UniProt:F4ISL7
Coordinates (TAIR10) chr2:-:10916456..10927390
Molecular Weight (calculated) 240358.00 Da
IEP (calculated) 7.62
GRAVY (calculated) -0.29
Length 2166 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSLRLQNPFL STPLLHGSFN RREKRINVAR RAFRSKRIYS EKKQNDWLAK VAKFSQFCGK NVQLLRKSLD SRSRMEVKCL KEPFVRSKDL VRSLAPVWEE
0101: GLFFLRCSVF FAVISGVCLL VWYGQNKARV FVETKLLPSV CSVLSETIQR EVDFGKVRRV SPLCITLEAS SIGPHGEEFS CGEVPTMKVC VRPFASLRRG
0201: KIVVDAILSN PTVLVAQKKD FTWLGIPLSD TTLPSHLSSE EGIDFRTKTR RVSREEAGIR WDEERDNDAR KAAEIGYIVP CKNYSQAKDN AVKHDRRFTE
0301: IANPNSFICM DEKMHSAEQH CMDPGVEYDV KHAELEKSFG IKIPGSGLKF LSKMLKVPRK YKFKWNSKSH KNSMSNISAK KRILERSASA ALSYFHSLSQ
0401: QKLDEPSVLS TNYDGLSLDM LLVKGDREIS NQYDRHVPYG EQSLANDLDG KGYRVRGKRL LGVKKASTLD KFTVSCDPFL MTVDRLCALL QTKRSPSVED
0501: IVNSSESETL SSQRGDISMN VVNQNTDDVP HGNRSGNQPR DFTFKKHEHQ PVANHWRPSW PRNKKLKEAV FNILTGSSKK LTGRADPNAP HLSDELEKLP
0601: AVYVEKTLPV MLDSVQFKGG TLLLLAYGDT EPREMRNVHG HVKFQNHYGR VYVQLGGNCN MWRSDVTSED GGLLSVDVFV DTVEQNWHAN LNVANFFVPI
0701: FERILEIPIE WSKGRATGEV HLCMSRGESF PNLHGQLDVT GLGFHINDAP SSFSDVSASL SFRGQRIFLH NANGWFGKVP LEASGDFGIH PDEGEFHLMC
0801: QVPYVEINAL MKTFKMKPLF FPLAGSVTAV FNCQGPLDAP VFVGSCMVSR KIAYLSPDLP TSLAYEAMLK NKEAGAVAAF DRVPFSYLSA NFTFNTDNCV
0901: ADLYGIRATL VDGGEIRGAG NAWICPEGEV DDTALDVNFS GNISFDKVLH RYMPEYFNIG MLKLGDLTGE TKLSGALLKP RFDIKWAAPK ADGSLTDARG
1001: DIVISHDNII VNSSSVAFDL FTKLDTSYHD PCLSHQDFTQ GEAMPFVVEG LDLDLRMRGF EFFSLVSSYP FDSPRPTHLK ATGRIKFLGK IKRHSTTKDG
1101: DVGSDKCEDA AAISSLDGDI SISSLKLNQL ILAPQLSGRL SVSRDHVKLD AAGRPDESLT LDFIGPLQPN SDENVQSGKL LSFSLQKGQL RANACFQPQQ
1201: SATLEIRNFP LDELELASLR GLIQKAEIQL NLQKRRGHGL LSVIRPKFSG VLGEALDVAV RWSGDVCFML SGRLEVMITV EKTILEQSNS RYELQGEYVL
1301: PGSRDRDLGQ KEAGSFLMRA MTGHLGSVIS SMGRWRMRLE VPKAEVAEML PLARLLSRST DPAVHSRSKD LFIQSVQNLC LQAENLRDLL EEIRGYYTPP
1401: SEVVLEDLSL PGLAELKGHW HGSLDASGGG NGDTLAEFDF HGDDWEWGTY KTQRVLATGS YNNDDGLRLK EMLIQKGNAT LHADGTLLGP KTNLHFAVLN
1501: FPVSLIPTLV EVVESSATDI VHSLRKLLSP IKGILHMEGD LRGSLEKPEC DVQVRLLDGA VGGIDLGRAE VFASLTSNSR FLFNSNFEPF VQNGHVHIQG
1601: SVPVSFSQKN MSEGEVSETD RGGAVKIPSW AKEKEDDEKR TSRDRSEERW DSQLAESLKG LYWNILDAGE VRLEADIKDG GMTLLTAISP YANWLQGNAD
1701: IRLQVGGTVD HPVLDGSASF HRASISSPVL RKPLTNFGGT LHVKSNRLCI TSLESRVSRK GKLVVKGNLP LRSNEASAGD GIELKCEVLE VRAKNFLSCQ
1801: VDTQLQITGS MLQPTISGNI KLSQGEAYLP HDKGGGAAPL NRLAANQYSI PGAAINQAVS SRYFARFFGT ERASSGMKFS QSTGKSNSVE KEIEEVKMKP
1901: NMDIRLSDMK LVLGPELRIM YPLILNFAVS GELELDGMAH PKFIKPKGVL TFENGDVNLV ATQVRLKREH LNVAKFEPEH GLDPLLDLAL VGSEWQFRVQ
2001: SRASNWQDKL VVTSTRSVEQ DALSPSEAAK VFESQLAESI LEGDGQLAFK KLATATLGTI MPRIEGKGEF GQARWRLVYA PQIPSLLSVD PTVDPLKSLA
2101: SNISFGTEVE VQLGKRLQAS VVRQMKDSEM AMQWTLIYQL TSRLRVLLQS APSKRLLFEY SATSQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)