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AT2G25650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA-binding storekeeper protein-related transcriptional regulator
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00270.1); Has 3870 Blast hits to 2696 proteins in 325 species: Archae - 4; Bacteria - 248; Metazoa - 996; Fungi - 327; Plants - 391; Viruses - 98; Other Eukaryotes - 1806 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTI3eggNOG:ENOG41107TPEMBL:AC006053EMBL:AY072164EMBL:AY084223EMBL:AY096417EMBL:CP002685
EnsemblPlants:AT2G25650EnsemblPlants:AT2G25650.1entrez:817106GeneID:817106GO:GO:0003677GO:GO:0006355Gramene:AT2G25650.1
hmmpanther:PTHR31662hmmpanther:PTHR31662:SF1HOGENOM:HOG000150648IntAct:Q8VYD2InterPro:IPR007592KEGG:ath:AT2G25650ncoils:Coil
OMA:EGNDPKFPfam:PF04504PhylomeDB:Q8VYD2PIR:A84651Proteomes:UP000006548RefSeq:NP_565602.1STRING:3702.AT2G25650.1
TAIR:AT2G25650UniGene:At.25632UniGene:At.28698UniProt:Q8VYD2
Coordinates (TAIR10) chr2:+:10914765..10916006
Molecular Weight (calculated) 43351.90 Da
IEP (calculated) 4.62
GRAVY (calculated) -1.06
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTPKQIDFS SCGGGDNSDD TLSHRESPRN PSSKRAAASF AAEAGEETMK KKKKKKKKNL GPPLIVRIWN EEDELSILKG LVDYRAKTGF NPKIDWDAFY
101: SFLGSSIVAK FSKEQVLSKI RKLKRRFHVH WEKISEGNDP KFTRSSDSEA FGFSSMIWGQ GEFGNDDGMD KEMVKEHDVN GNGAAENGTA RIAQENESGE
201: EMLKEHEETL NENGAEEIRD NDETARKAQQ LESESEEEML KEHEEPFNEN GAENIRDNNG TTQIAQQSES ESEEMLKEHE EVANTELVNE NGAAKTTENG
301: TTGGKERHDD DDDDELCAVQ DAFEAVMSQG LSGYQKKLQL EKLMNLGTGK RRELSDEWKA LCVEERRLNI KKLRFSAKLA EAANDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)