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AT2G25610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATPase, F0/V0 complex, subunit C protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPase, F0/V0 complex, subunit C protein; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT4G32530.1); Has 2203 Blast hits to 1865 proteins in 426 species: Archae - 105; Bacteria - 196; Metazoa - 767; Fungi - 479; Plants - 333; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0636eggNOG:KOG0233EMBL:AC006053EMBL:AY084540
EMBL:BT026106EMBL:CP002685EnsemblPlants:AT2G25610EnsemblPlants:AT2G25610.1
entrez:817101GeneID:817101Genevisible:Q9SLA2GO:GO:0000139
GO:GO:0005773GO:GO:0005789GO:GO:0015078GO:GO:0015991
GO:GO:0016021GO:GO:0033179Gramene:AT2G25610.1hmmpanther:PTHR10263
hmmpanther:PTHR10263:SF10HOGENOM:HOG000056522InParanoid:Q9SLA2InterPro:IPR000245
InterPro:IPR002379KEGG:ath:AT2G25610KO:K03661OMA:VMATNMF
PaxDb:Q9SLA2Pfam:PF00137Pfam:Q9SLA2PhylomeDB:Q9SLA2
PIR:E84650PRIDE:Q9SLA2PRINTS:PR00122PRO:PR:Q9SLA2
ProteinModelPortal:Q9SLA2Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977
RefSeq:NP_180132.1SMR:Q9SLA2STRING:3702.AT2G25610.1SUPFAM:0035882
SUPFAM:SSF81333TAIR:AT2G25610TMHMM:TMhelixUniGene:At.24605
UniProt:Q9SLA2
Coordinates (TAIR10) chr2:-:10901585..10902494
Molecular Weight (calculated) 18219.60 Da
IEP (calculated) 7.92
GRAVY (calculated) 1.11
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGVAIHASS WGAALVRISP YTFSAIGIAI SIGVSVLGAA WGIYITGSSL IGAAIEAPRI TSKNLISVIF CEAVAIYGVI VAIILQTKLE SVPSSKMYDA
101: ESLRAGYAIF ASGIIVGFAN LVCGLCVGII GSSCALSDAQ NSTLFVKILV IEIFGSALGL FGVIVGIIMS AQATWPTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)