AT2G25580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G32450.1); Has 21306 Blast hits to 10572 proteins in 176 species: Archae - 0; Bacteria - 9; Metazoa - 6; Fungi - 21; Plants - 21172; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10888102..10889949 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69910.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.56 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 615 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYTKLSLFPR KSSSLLSIAN EKRIHQFLRN LCTAVERLDF GNSNDSSEMN PREGYNGRIQ NRTGSSGEVS ESIHTQSQSL GSNQGRNEQS WKQSPSLSNS 101: QVQSQYQGNW YGTNSDYQNG VGSSWHSGKT IDREVYDMIM EFDEYCIQEN VRVALTTMEK LEKKGYVMDF VRLLKLTQLC REGNVYYEVS VLEEAKVSVL 201: AKIRALVNNL EANYLKYYTD IMIEEYDAFC KHGKVKKALY TIDILASMNY VVDLSRLLRL AKICGEAEGL QEAKTVHGKI SASVSHLDLS SNHVLLEMYS 301: NCGLANEAAS VFEKMSEKNL ETWCIIIRCF AKNGFGEDAI DMFSRFKEEG NIPDGQLFRG IFYACGMLGD VDEGLLHFES MSRDYGIAPS IEDYVSLVEM 401: YALPGFLDEA LEFVERMPME PNVDVWETLM NLSRVHGNLE LGDYCAEVVE FLDPTRLNKQ SREGFIPVKA SDVEKESLKK RSGILHGVKS SMQEFRAGDT 501: NLPENDELFQ LLRNLKMHMV EVGYVAETRM ALHDIDQESK ETLLLGHSER IAFARAVLNS APRKPFTVIK NLRVCVDCHN ALKIMSDIVG REVITRDIKR 601: FHQMKNGACT CKDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)