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AT2G25570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 3445 Blast hits to 2037 proteins in 553 species: Archae - 0; Bacteria - 2582; Metazoa - 139; Fungi - 7; Plants - 69; Viruses - 6; Other Eukaryotes - 642 (source: NCBI BLink).
Protein Annotations
DNASU:817096eggNOG:COG0790eggNOG:KOG1550EMBL:AC006053
EMBL:AC006300EMBL:AK176743EMBL:BT025254EMBL:CP002685
EMBL:DQ446566EnsemblPlants:AT2G25570EnsemblPlants:AT2G25570.1EnsemblPlants:AT2G25570.3
entrez:817096ExpressionAtlas:Q9SLA6Gene3D:1.25.40.10GeneID:817096
Gramene:AT2G25570.1Gramene:AT2G25570.3hmmpanther:PTHR11102InterPro:IPR006597
InterPro:IPR011990OMA:DRVIDYCPfam:PF08238PhylomeDB:Q9SLA6
PIR:A84650Proteomes:UP000006548RefSeq:NP_001118384.1RefSeq:NP_565600.1
SMART:SM00671SMR:Q9SLA6STRING:3702.AT2G25570.1SUPFAM:SSF81901
TAIR:AT2G25570UniGene:At.39007UniGene:At.52913UniProt:Q9SLA6
Coordinates (TAIR10) chr2:-:10885881..10887842
Molecular Weight (calculated) 32411.90 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.31
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRRLILRQA AAVAAESKIA CHHTVHGFEQ RRGLHSRNEK AMEYVAKGWS AIKEVERVID YCELNDRRLI PLLRGAKENF ELALEADNLN THARYWLSKL
101: HLKYHVPGAC KAVGAALLVE AADMGNADAQ YELGCRLRVE NDHVQSDQQA FHYIENAVDQ LHPGALYLLG IVYLTGDCVK QDVDSAIWCF HRASEKGHAG
201: AAIAYGSLLL RGVQVPESLT KLNVVGVSPP KRARKNLENP EMNPLEMAKE QFQIAARAGC DLGLKWLQRV EQEEKLLMRE QDNECAYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)